Homologs in group_4298

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4298

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4298

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P55709 8.03e-144 422 47 1 449 3 NGR_a00720 Uncharacterized protein y4yA Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q9RTK2 2.84e-14 77 26 10 305 3 lysA Diaminopimelate decarboxylase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P41023 4.91e-12 71 24 17 446 3 lysA Diaminopimelate decarboxylase Bacillus methanolicus
Q9Z661 1.62e-11 69 23 13 382 3 lysA Diaminopimelate decarboxylase Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q6ZG77 2.16e-11 69 24 8 302 2 LYSA Probable diaminopimelate decarboxylase, chloroplastic Oryza sativa subsp. japonica
Q5HG20 5.8e-11 67 21 17 427 3 lysA Diaminopimelate decarboxylase Staphylococcus aureus (strain COL)
Q9KCM5 1.93e-10 66 22 17 441 3 lysA Diaminopimelate decarboxylase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P27121 1.44e-09 63 29 4 179 2 spe-1 Ornithine decarboxylase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q9X1K5 1.58e-09 63 25 11 257 1 lysA Diaminopimelate decarboxylase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q9PII5 3.7e-09 62 28 15 311 3 lysA Diaminopimelate decarboxylase Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q949X7 3.94e-09 62 25 8 216 1 LYSA1 Diaminopimelate decarboxylase 1, chloroplastic Arabidopsis thaliana
Q94A94 2.83e-08 59 25 8 216 1 LYSA2 Diaminopimelate decarboxylase 2, chloroplastic Arabidopsis thaliana
P09890 3.53e-08 59 23 18 435 1 lysA Diaminopimelate decarboxylase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
O29458 9.94e-08 57 23 12 323 3 lysA Diaminopimelate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q8RQM6 8.11e-07 55 22 16 428 3 lysA Diaminopimelate decarboxylase Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
A5GB52 8.37e-07 55 21 11 261 3 speA Biosynthetic arginine decarboxylase Geotalea uraniireducens (strain Rf4)
B3EAF3 9.88e-07 55 27 9 198 3 speA Biosynthetic arginine decarboxylase Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
O27390 1.08e-06 54 21 16 429 3 lysA Diaminopimelate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q9ZME5 2.2e-06 53 22 20 436 3 lysA Diaminopimelate decarboxylase Helicobacter pylori (strain J99 / ATCC 700824)
O82475 3.48e-06 53 22 13 368 2 ADC1 Arginine decarboxylase Brassica juncea
Q9JWA6 3.95e-06 52 22 17 428 3 lysA Diaminopimelate decarboxylase Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q9KVL7 4.7e-06 52 26 9 246 1 lysA Diaminopimelate decarboxylase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A0A4W3 5.11e-06 52 27 9 199 3 speA Biosynthetic arginine decarboxylase Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
O81160 5.43e-06 52 23 12 314 3 SPE2 Arginine decarboxylase (Fragment) Theobroma cacao
Q96412 6.86e-06 52 23 12 321 2 ADC Arginine decarboxylase Dianthus caryophyllus
A9KY70 1.23e-05 51 22 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella baltica (strain OS195)
A6WM65 1.27e-05 51 22 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella baltica (strain OS185)
A3D3G2 1.27e-05 51 22 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella baltica (strain OS155 / ATCC BAA-1091)
B8EAI2 1.27e-05 51 22 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella baltica (strain OS223)
O23141 1.51e-05 51 23 16 379 1 ADC2 Arginine decarboxylase 2 Arabidopsis thaliana
Q43075 2.12e-05 50 22 11 319 2 None Arginine decarboxylase Pisum sativum
A1RKK8 2.42e-05 50 21 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella sp. (strain W3-18-1)
A4Y5Y9 2.42e-05 50 21 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
P11926 2.66e-05 50 23 7 180 1 ODC1 Ornithine decarboxylase Homo sapiens
Q9SI64 2.69e-05 50 21 13 380 1 ADC1 Arginine decarboxylase 1, chloroplastic Arabidopsis thaliana
P19572 2.76e-05 50 22 11 328 3 lysA Diaminopimelate decarboxylase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O67262 3.57e-05 49 25 9 235 1 lysA Diaminopimelate decarboxylase Aquifex aeolicus (strain VF5)
Q9JXM2 4.02e-05 49 23 16 385 3 lysA Diaminopimelate decarboxylase Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P56129 4.1e-05 49 22 15 400 3 lysA Diaminopimelate decarboxylase Helicobacter pylori (strain ATCC 700392 / 26695)
A0A1S3YCW2 4.1e-05 50 22 14 368 1 ADC1A Arginine decarboxylase 1A, chloroplastic Nicotiana tabacum
B9M6H6 6.11e-05 49 24 8 199 3 speA Biosynthetic arginine decarboxylase Geotalea daltonii (strain DSM 22248 / JCM 15807 / FRC-32)
P00860 6.72e-05 48 23 7 180 1 Odc1 Ornithine decarboxylase Mus musculus
B4XMC6 7.13e-05 48 22 16 400 1 lysA Diaminopimelate decarboxylase Helicobacter pylori
P27119 7.14e-05 48 23 7 180 2 Odc1 Ornithine decarboxylase Mus pahari
Q39X78 9.19e-05 48 27 9 199 3 speA Biosynthetic arginine decarboxylase Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)
P27117 9.69e-05 48 23 7 180 2 ODC1 Ornithine decarboxylase Bos taurus
P27118 0.000103 48 24 8 182 2 ODC1 Ornithine decarboxylase (Fragment) Gallus gallus
A0A1S3WYR7 0.000112 48 22 14 368 3 ADC1B Arginine decarboxylase 1B, chloroplastic Nicotiana tabacum
P09057 0.000119 48 23 7 180 1 Odc1 Ornithine decarboxylase Rattus norvegicus
A0KVN8 0.000126 48 21 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella sp. (strain ANA-3)
Q0HW78 0.000129 48 21 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella sp. (strain MR-7)
Q0HJY2 0.000129 48 21 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella sp. (strain MR-4)
Q7NU27 0.000133 48 24 10 244 3 speA Biosynthetic arginine decarboxylase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
Q083L6 0.000228 47 24 12 264 3 speA Biosynthetic arginine decarboxylase Shewanella frigidimarina (strain NCIMB 400)
P07805 0.000242 47 25 7 183 1 None Ornithine decarboxylase Trypanosoma brucei brucei
Q9X5M1 0.000253 47 21 17 416 3 lysA Diaminopimelate decarboxylase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q58497 0.000337 46 21 11 336 1 lysA Diaminopimelate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P41931 0.000606 45 22 5 180 1 odc-1 Ornithine decarboxylase Caenorhabditis elegans
P49726 0.000691 45 21 10 319 2 None Arginine decarboxylase Solanum lycopersicum
B1KRD4 0.000868 45 19 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella woodyi (strain ATCC 51908 / MS32)
A1S712 0.000882 45 19 9 236 3 speA Biosynthetic arginine decarboxylase Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
A8FWJ3 0.001 45 20 9 241 3 speA Biosynthetic arginine decarboxylase Shewanella sediminis (strain HAW-EB3)
P78599 0.001 45 24 7 181 3 SPE1 Ornithine decarboxylase Candida albicans (strain SC5314 / ATCC MYA-2876)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01135
Feature type CDS
Gene -
Product Y4yA family PLP-dependent enzyme
Location 279605 - 281008 (strand: 1)
Length 1404 (nucleotides) / 467 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4298
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0019 Amino acid transport and metabolism (E) E Diaminopimelate decarboxylase

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG044285 Y4yA family PLP-dependent enzyme VF1252 Nutritional/Metabolic factor

Protein Sequence

MSSLLNTYYRANESWQIAITQALPPYIDPVIIRWLETSPDTLVHLTQIYGSPLNIVWPHTVEQNVNAMVEVAKTFGIQTNLYYGVKVNKSQSLLQAAVAAGTGADVSSLYELNDAIRAGCKGTELCATGPAKTTAFLQALIVQGARIVIDSIEEMDELIHLATRWISPSGRISILLRFRPESNHISRFGMLSAEIMTALEKLNYSDQVKVDGFHFHLSGYSSVSRIKAFFDTLPLISYARALGYSPYIIDIGGGLPVQYVDSHCYKKWLSTQTHKDYRTRRIPDSFYPYGGEINAQGWLTEFLTGVDPTGKRVCDALIEEGLTLCLEPGRSLVNQSAISVFRVCRVRPYDHVGHVIFVEGTSFSACETWFNSEFLSDPLHIYRNNHQPLSSAGNAWIAGHSCLDDDVITNRLIAFAHLPKPGDLLIFANTAGYQMDLLENQFHRHPLPTRLTAVINSHQKPIFTIDN

Flanking regions ( +/- flanking 50bp)

CCACGTACTTTCCTTGCCTCGGTAAGTGTTGACTTCTAAGAGGGTTCCATATGTCTTCGTTGTTAAATACTTATTACCGAGCAAATGAATCTTGGCAGATCGCTATAACCCAAGCATTACCCCCTTATATCGATCCGGTTATTATCCGTTGGTTGGAGACATCCCCTGATACCCTTGTTCATTTAACACAGATATATGGTTCACCCCTTAATATTGTCTGGCCTCATACTGTGGAGCAGAACGTTAATGCCATGGTCGAAGTCGCCAAAACATTTGGTATACAAACCAATTTGTATTATGGGGTTAAAGTCAATAAATCACAGTCATTATTACAAGCCGCTGTTGCTGCGGGAACTGGGGCGGATGTATCTAGCCTATATGAACTCAACGATGCTATTCGTGCGGGATGTAAAGGTACAGAGTTGTGTGCTACAGGCCCTGCCAAAACAACGGCATTTTTACAGGCGTTAATAGTGCAAGGGGCACGGATTGTTATTGATTCTATTGAGGAAATGGACGAGCTTATTCACCTTGCTACAAGGTGGATAAGTCCATCAGGACGTATAAGTATACTGCTGCGTTTTCGTCCTGAGTCTAATCATATCAGTCGTTTTGGTATGTTATCCGCTGAGATCATGACAGCGCTTGAGAAACTTAATTATAGTGACCAAGTAAAGGTTGATGGATTCCATTTCCATCTTAGTGGTTACTCTTCGGTATCTAGGATCAAAGCTTTTTTTGATACCTTACCCTTGATTAGCTACGCACGTGCTTTGGGTTACTCCCCTTATATTATCGATATTGGGGGAGGGTTACCTGTTCAGTATGTAGACAGTCATTGTTATAAGAAATGGCTCTCTACGCAAACACATAAAGACTATCGTACTCGACGAATTCCTGATTCTTTCTATCCATATGGTGGAGAGATAAATGCCCAAGGCTGGCTCACTGAGTTTCTAACCGGAGTCGATCCCACAGGTAAAAGAGTTTGTGATGCATTAATTGAGGAAGGATTAACACTTTGCCTTGAACCCGGAAGGAGCTTGGTTAATCAAAGTGCGATCAGTGTATTTCGTGTCTGTCGAGTTCGTCCATATGATCATGTCGGACATGTTATTTTTGTCGAAGGAACTAGTTTTAGCGCATGTGAAACGTGGTTTAATTCTGAATTCTTAAGTGATCCTCTCCATATTTATCGAAATAACCATCAGCCACTTTCTTCTGCTGGAAATGCTTGGATTGCAGGCCATAGCTGTTTGGACGACGATGTTATCACCAATCGTTTGATCGCTTTTGCACACCTACCAAAGCCAGGTGATTTACTGATATTTGCTAATACCGCAGGTTACCAAATGGATTTACTGGAAAATCAATTTCATCGGCATCCGTTGCCCACAAGATTAACTGCGGTCATAAACTCACATCAAAAACCTATATTTACCATTGATAATTAAGGACTTTTAATATGGTTTTTAGCAAAGTAACTGATTTAATTGGTAATACT