Homologs in group_2010

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15095 FBDBKF_15095 100.0 Morganella morganii S1 lysA diaminopimelate decarboxylase
EHELCC_11150 EHELCC_11150 100.0 Morganella morganii S2 lysA diaminopimelate decarboxylase
NLDBIP_11495 NLDBIP_11495 100.0 Morganella morganii S4 lysA diaminopimelate decarboxylase
HKOGLL_09965 HKOGLL_09965 100.0 Morganella morganii S5 lysA diaminopimelate decarboxylase
F4V73_RS12355 F4V73_RS12355 91.1 Morganella psychrotolerans lysA diaminopimelate decarboxylase
PMI_RS01660 PMI_RS01660 69.9 Proteus mirabilis HI4320 lysA diaminopimelate decarboxylase

Distribution of the homologs in the orthogroup group_2010

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2010

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
E0IWI3 0.0 556 67 2 400 1 lysA Diaminopimelate decarboxylase Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W)
P00861 0.0 556 67 2 400 1 lysA Diaminopimelate decarboxylase Escherichia coli (strain K12)
Q9ZBH5 0.0 515 63 1 402 3 lysA Diaminopimelate decarboxylase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q89AC6 2.38e-180 511 58 3 411 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P57513 1.02e-172 492 58 3 400 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9C4 4.22e-172 490 57 3 402 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
O27390 3.43e-71 233 36 11 407 3 lysA Diaminopimelate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q9ZME5 7.95e-58 197 35 13 413 3 lysA Diaminopimelate decarboxylase Helicobacter pylori (strain J99 / ATCC 700824)
Q9Z661 1.63e-57 197 32 14 414 3 lysA Diaminopimelate decarboxylase Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q9PII5 9.54e-57 194 32 12 414 3 lysA Diaminopimelate decarboxylase Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
O67262 1.45e-56 194 32 12 411 1 lysA Diaminopimelate decarboxylase Aquifex aeolicus (strain VF5)
O05321 4.66e-56 193 34 15 418 3 lysA Diaminopimelate decarboxylase Pseudomonas fluorescens
B4XMC6 2.87e-54 188 34 14 413 1 lysA Diaminopimelate decarboxylase Helicobacter pylori
P56129 8.51e-54 187 33 14 418 3 lysA Diaminopimelate decarboxylase Helicobacter pylori (strain ATCC 700392 / 26695)
Q9JWA6 1.38e-51 181 32 16 420 3 lysA Diaminopimelate decarboxylase Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q9JXM2 2.23e-51 181 33 17 422 3 lysA Diaminopimelate decarboxylase Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9KVL7 2.42e-50 178 33 16 419 1 lysA Diaminopimelate decarboxylase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P19572 2.98e-50 177 32 14 420 3 lysA Diaminopimelate decarboxylase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P44316 8.55e-49 174 33 13 417 3 lysA Diaminopimelate decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9RTK2 7.38e-48 171 33 10 403 3 lysA Diaminopimelate decarboxylase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q6ZG77 1.59e-47 172 31 10 403 2 LYSA Probable diaminopimelate decarboxylase, chloroplastic Oryza sativa subsp. japonica
Q58497 1.03e-46 169 33 16 432 1 lysA Diaminopimelate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P23630 2.58e-46 168 32 16 431 3 lysA Diaminopimelate decarboxylase Bacillus subtilis (strain 168)
O29458 4.89e-46 167 30 13 410 3 lysA Diaminopimelate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q9X1K5 5.56e-46 166 31 14 403 1 lysA Diaminopimelate decarboxylase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q2A5D5 1.34e-45 165 31 13 383 3 lysA Diaminopimelate decarboxylase Francisella tularensis subsp. holarctica (strain LVS)
Q9HK20 6.33e-45 163 31 14 414 3 lysA Diaminopimelate decarboxylase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Q9KCM5 5.67e-42 156 30 10 417 3 lysA Diaminopimelate decarboxylase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q5HG20 8.2e-42 155 30 17 415 3 lysA Diaminopimelate decarboxylase Staphylococcus aureus (strain COL)
P41023 1.2e-40 152 30 15 411 3 lysA Diaminopimelate decarboxylase Bacillus methanolicus
Q8A800 2.16e-40 150 30 16 400 3 lysA Diaminopimelate decarboxylase Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
Q949X7 1.72e-39 150 29 11 402 1 LYSA1 Diaminopimelate decarboxylase 1, chloroplastic Arabidopsis thaliana
Q94A94 1.32e-38 148 29 10 398 1 LYSA2 Diaminopimelate decarboxylase 2, chloroplastic Arabidopsis thaliana
O69203 1.72e-37 144 31 15 417 3 lysA Diaminopimelate decarboxylase Actinosynnema pretiosum subsp. auranticum
P31851 4.08e-35 137 30 13 407 3 tabA Protein TabA Pseudomonas amygdali pv. tabaci
Q8RQM6 2.52e-29 122 27 13 422 3 lysA Diaminopimelate decarboxylase Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q50140 1.33e-27 117 26 13 430 3 lysA Diaminopimelate decarboxylase Mycobacterium leprae (strain TN)
Q55484 2.86e-27 116 27 15 427 3 lysA Diaminopimelate decarboxylase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P09890 3.02e-27 115 28 15 424 1 lysA Diaminopimelate decarboxylase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P9WIU7 6.73e-27 115 28 16 445 1 lysA Diaminopimelate decarboxylase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIU6 6.73e-27 115 28 16 445 3 lysA Diaminopimelate decarboxylase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A5M5 6.73e-27 115 28 16 445 3 lysA Diaminopimelate decarboxylase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q2L4H3 1.58e-26 113 26 14 420 1 btrK L-glutamyl-[BtrI acyl-carrier protein] decarboxylase Niallia circulans
Q9X5M1 3.66e-25 110 27 14 432 3 lysA Diaminopimelate decarboxylase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q8ZNC4 6.57e-23 103 26 21 441 1 dokD D-ornithine/D-lysine decarboxylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q54UF3 3.1e-19 92 24 11 350 3 odc Probable ornithine decarboxylase Dictyostelium discoideum
A0A1S4AUX8 2.03e-16 84 24 13 398 2 ODC1A Ornithine decarboxylase 1A, chloroplastic Nicotiana tabacum
E0WN94 6.66e-16 82 24 13 396 2 ODC Ornithine decarboxylase, chloroplastic Nicotiana glauca
P50134 7.43e-16 82 23 14 398 2 None Ornithine decarboxylase Datura stramonium
P93351 2.37e-15 80 24 13 398 2 ODC1B Ornithine decarboxylase 1B, chloroplastic Nicotiana tabacum
Q9FPK5 5.72e-15 79 24 13 398 1 ODC Ornithine decarboxylase, chloroplastic Nicotiana glutinosa
O22616 8.34e-15 79 25 18 408 2 ODC Ornithine decarboxylase Solanum lycopersicum
Q9UQW9 2.08e-13 75 23 13 362 2 spe1 Ornithine decarboxylase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q8S3N2 8.06e-13 73 22 13 407 2 ODC Ornithine decarboxylase Capsicum annuum
Q2G1M6 1.54e-11 69 23 15 363 1 sbnH 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase Staphylococcus aureus (strain NCTC 8325 / PS 47)
B8NHE2 6.66e-11 67 21 10 349 1 flvG Decarboxylase flvG Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167)
P07805 4.78e-10 64 25 18 394 1 None Ornithine decarboxylase Trypanosoma brucei brucei
P08432 4.99e-10 64 22 13 392 1 SPE1 Ornithine decarboxylase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O50657 1.15e-08 60 22 9 353 1 ldc Lysine/ornithine decarboxylase Selenomonas ruminantium
P41931 1.71e-08 59 23 16 369 1 odc-1 Ornithine decarboxylase Caenorhabditis elegans
P27118 3.84e-08 58 22 15 371 2 ODC1 Ornithine decarboxylase (Fragment) Gallus gallus
Q9I8S4 4.46e-07 55 21 11 359 2 azin2 Antizyme inhibitor 2 Xenopus laevis
P27116 7.65e-07 55 25 12 282 1 None Ornithine decarboxylase Leishmania donovani
P27120 8.93e-07 54 22 15 373 2 odc1-a Ornithine decarboxylase 1 Xenopus laevis
P49725 3.73e-06 52 23 12 362 2 ODC Ornithine decarboxylase Panagrellus redivivus
Q63764 3.18e-05 49 21 13 349 1 Azin1 Antizyme inhibitor 1 Rattus norvegicus
P78599 3.92e-05 49 20 14 375 3 SPE1 Ornithine decarboxylase Candida albicans (strain SC5314 / ATCC MYA-2876)
P27117 5.73e-05 48 21 14 376 2 ODC1 Ornithine decarboxylase Bos taurus
P27119 0.000221 47 21 13 364 2 Odc1 Ornithine decarboxylase Mus pahari
Q5R7K3 0.000248 47 21 16 377 2 AZIN1 Antizyme inhibitor 1 Pongo abelii
O14977 0.000369 46 21 16 377 1 AZIN1 Antizyme inhibitor 1 Homo sapiens
P09057 0.000462 45 21 14 364 1 Odc1 Ornithine decarboxylase Rattus norvegicus
P11926 0.000518 45 21 14 376 1 ODC1 Ornithine decarboxylase Homo sapiens

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_11355
Feature type CDS
Gene lysA
Product diaminopimelate decarboxylase
Location 56144 - 57394 (strand: -1)
Length 1251 (nucleotides) / 416 (amino acids)

Contig

Accession ZDB_368
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2010
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0019 Amino acid transport and metabolism (E) E Diaminopimelate decarboxylase

Kegg Ortholog Annotation(s)

Protein Sequence

MTIATKTLRAPFTPDALRSLAQQYGTPLWLYDSEVIVSRIARLNHFDVIRFAQKANSNIHILRLMHEHGVKVDSVSAGEIERALKAGYRPDEIVFTADMITEETLDRVLELGIAVNTGSVDMLRQIGARRPGHPVWLRINPGFGHGHSQKTNTGGENSKHGIWFADLGEALAEISHYQLTLTGIHMHIGSGVDYEHLATVCDAMAELVITNNLDIRAISAGGGLSTPYREGDEIIDIDNYFSLWDAARARIARHLGREITLEIEPGRYLVAESGILLAQVRAVKGMGSRHYVLVDSGFNDLMRPAMYGSYHHISVLPAAGEPQNSTVRETIVAGPLCESGDVFTQLEGGMVVPRALPEAAVNDFLVFHDTGAYGASMSSNYNSRPLLPEILFTDGKAKLIRRRQTIDELMALEITE

Flanking regions ( +/- flanking 50bp)

TTTGTCACGATGGAAAAAAATGAGATCACGATCAAAAAGAGCACAACATCATGACCATCGCAACCAAAACACTCCGCGCCCCGTTTACCCCGGATGCCCTGCGCAGCCTGGCTCAGCAGTACGGTACTCCGCTGTGGCTGTATGACAGTGAGGTGATTGTCAGCCGTATTGCACGGCTGAACCACTTTGATGTGATCCGTTTTGCGCAGAAAGCCAATTCCAATATTCATATTCTGCGCCTGATGCATGAGCATGGTGTAAAAGTGGATTCTGTATCTGCCGGGGAAATTGAACGGGCACTGAAAGCCGGTTACCGTCCGGATGAGATAGTTTTCACCGCCGATATGATCACAGAAGAAACGCTGGATCGTGTGCTGGAACTCGGCATCGCGGTGAATACCGGCTCGGTGGATATGCTGCGCCAGATTGGTGCCCGTCGTCCGGGACACCCGGTGTGGCTGCGCATTAATCCGGGGTTTGGTCACGGCCACAGCCAGAAAACCAATACCGGTGGCGAGAACAGCAAACACGGGATCTGGTTTGCGGATCTCGGTGAAGCACTGGCGGAGATCAGCCATTATCAGCTGACATTAACCGGCATCCATATGCATATCGGTTCCGGTGTGGATTATGAGCACCTGGCTACGGTCTGTGATGCCATGGCCGAACTGGTGATCACCAATAATCTGGATATCCGCGCGATTTCTGCCGGCGGCGGATTATCGACCCCTTACCGTGAAGGGGATGAAATTATTGATATCGATAATTATTTTTCACTCTGGGATGCCGCCCGGGCACGTATTGCCCGCCATCTCGGCCGTGAGATCACCCTGGAAATTGAACCGGGTCGTTATCTGGTGGCAGAATCCGGTATTCTGCTGGCACAGGTACGGGCGGTCAAAGGTATGGGGAGCCGTCACTATGTGCTGGTGGACAGTGGTTTTAATGACCTGATGCGTCCGGCCATGTACGGCAGTTATCACCATATTTCAGTGTTGCCGGCAGCGGGAGAACCACAAAACAGTACCGTGCGGGAAACAATTGTCGCCGGGCCGTTATGTGAATCCGGGGATGTGTTTACCCAGCTGGAAGGCGGAATGGTGGTGCCGCGCGCATTACCGGAAGCCGCTGTGAATGATTTTCTGGTCTTTCACGATACCGGGGCATACGGCGCATCGATGTCATCGAATTACAACAGCCGTCCGTTATTACCGGAAATTTTATTTACTGACGGAAAAGCAAAATTGATCCGCCGCCGTCAGACCATTGATGAACTGATGGCGCTGGAAATCACTGAATAATATATTATCCGTTATCGTTTCTGATTGATATTGAAAATCCCCGGAAATAA