Homologs in group_2010

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15095 FBDBKF_15095 69.9 Morganella morganii S1 lysA diaminopimelate decarboxylase
EHELCC_11150 EHELCC_11150 69.9 Morganella morganii S2 lysA diaminopimelate decarboxylase
NLDBIP_11495 NLDBIP_11495 69.9 Morganella morganii S4 lysA diaminopimelate decarboxylase
LHKJJB_11355 LHKJJB_11355 69.9 Morganella morganii S3 lysA diaminopimelate decarboxylase
HKOGLL_09965 HKOGLL_09965 69.9 Morganella morganii S5 lysA diaminopimelate decarboxylase
F4V73_RS12355 F4V73_RS12355 70.6 Morganella psychrotolerans lysA diaminopimelate decarboxylase

Distribution of the homologs in the orthogroup group_2010

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2010

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
E0IWI3 0.0 568 68 0 395 1 lysA Diaminopimelate decarboxylase Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / LMG 11080 / NBRC 13500 / NCIMB 8666 / NRRL B-766 / W)
P00861 0.0 568 68 0 395 1 lysA Diaminopimelate decarboxylase Escherichia coli (strain K12)
Q9ZBH5 0.0 530 62 1 403 3 lysA Diaminopimelate decarboxylase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q8K9C4 0.0 513 59 2 399 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57513 5.98e-180 510 58 4 404 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AC6 2.51e-177 503 56 3 409 3 lysA Diaminopimelate decarboxylase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O27390 6.66e-64 214 33 12 412 3 lysA Diaminopimelate decarboxylase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q9PII5 6.52e-56 192 33 12 416 3 lysA Diaminopimelate decarboxylase Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P44316 2.26e-55 191 31 12 420 3 lysA Diaminopimelate decarboxylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O29458 4.78e-52 182 32 14 427 3 lysA Diaminopimelate decarboxylase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q9ZME5 3.92e-51 180 32 11 416 3 lysA Diaminopimelate decarboxylase Helicobacter pylori (strain J99 / ATCC 700824)
O67262 7.08e-51 179 30 12 421 1 lysA Diaminopimelate decarboxylase Aquifex aeolicus (strain VF5)
Q9JWA6 8.93e-50 176 32 16 423 3 lysA Diaminopimelate decarboxylase Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q9Z661 1.66e-49 176 30 13 421 3 lysA Diaminopimelate decarboxylase Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q9JXM2 2.11e-49 175 33 16 424 3 lysA Diaminopimelate decarboxylase Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9RTK2 3.21e-48 171 32 12 414 3 lysA Diaminopimelate decarboxylase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q9KVL7 4.66e-48 172 31 14 422 1 lysA Diaminopimelate decarboxylase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B4XMC6 3.84e-47 169 31 12 417 1 lysA Diaminopimelate decarboxylase Helicobacter pylori
Q58497 3.88e-47 170 32 15 436 1 lysA Diaminopimelate decarboxylase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P56129 5.36e-47 169 31 12 417 3 lysA Diaminopimelate decarboxylase Helicobacter pylori (strain ATCC 700392 / 26695)
O05321 1.09e-46 168 30 14 422 3 lysA Diaminopimelate decarboxylase Pseudomonas fluorescens
Q9X1K5 1.3e-45 164 31 14 406 1 lysA Diaminopimelate decarboxylase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q2A5D5 5.05e-44 160 32 14 393 3 lysA Diaminopimelate decarboxylase Francisella tularensis subsp. holarctica (strain LVS)
Q9KCM5 3.33e-43 159 31 12 425 3 lysA Diaminopimelate decarboxylase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P23630 1.68e-41 155 30 15 425 3 lysA Diaminopimelate decarboxylase Bacillus subtilis (strain 168)
P41023 2.65e-41 154 29 15 418 3 lysA Diaminopimelate decarboxylase Bacillus methanolicus
P19572 6.81e-41 152 29 15 423 3 lysA Diaminopimelate decarboxylase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q6ZG77 1.7e-40 153 29 14 417 2 LYSA Probable diaminopimelate decarboxylase, chloroplastic Oryza sativa subsp. japonica
Q9HK20 2.92e-39 148 29 14 413 3 lysA Diaminopimelate decarboxylase Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Q5HG20 5.23e-39 148 29 15 417 3 lysA Diaminopimelate decarboxylase Staphylococcus aureus (strain COL)
O69203 2.24e-37 144 30 16 425 3 lysA Diaminopimelate decarboxylase Actinosynnema pretiosum subsp. auranticum
Q8A800 1.12e-35 138 29 14 391 3 lysA Diaminopimelate decarboxylase Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)
Q94A94 2.06e-34 136 29 16 413 1 LYSA2 Diaminopimelate decarboxylase 2, chloroplastic Arabidopsis thaliana
Q949X7 5.56e-34 135 28 15 413 1 LYSA1 Diaminopimelate decarboxylase 1, chloroplastic Arabidopsis thaliana
Q55484 5.38e-32 129 27 12 420 3 lysA Diaminopimelate decarboxylase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8RQM6 3.31e-30 124 28 18 433 3 lysA Diaminopimelate decarboxylase Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
P31851 3.25e-28 118 29 16 419 3 tabA Protein TabA Pseudomonas amygdali pv. tabaci
P09890 1.28e-27 117 28 17 431 1 lysA Diaminopimelate decarboxylase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q8ZNC4 6.19e-26 112 25 18 443 1 dokD D-ornithine/D-lysine decarboxylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q2L4H3 8.03e-26 111 24 15 437 1 btrK L-glutamyl-[BtrI acyl-carrier protein] decarboxylase Niallia circulans
Q50140 4.41e-25 110 26 16 439 3 lysA Diaminopimelate decarboxylase Mycobacterium leprae (strain TN)
P9WIU7 4.82e-25 109 28 17 439 1 lysA Diaminopimelate decarboxylase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIU6 4.82e-25 109 28 17 439 3 lysA Diaminopimelate decarboxylase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A5M5 4.82e-25 109 28 17 439 3 lysA Diaminopimelate decarboxylase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9X5M1 3.03e-24 107 26 15 440 3 lysA Diaminopimelate decarboxylase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q54UF3 2.01e-14 78 24 16 373 3 odc Probable ornithine decarboxylase Dictyostelium discoideum
Q2G1M6 1.02e-11 69 23 15 422 1 sbnH 2-[(L-alanin-3-ylcarbamoyl)methyl]-2-hydroxybutanedioate decarboxylase Staphylococcus aureus (strain NCTC 8325 / PS 47)
P41931 1.87e-11 68 23 18 387 1 odc-1 Ornithine decarboxylase Caenorhabditis elegans
O50657 7.37e-11 67 20 10 391 1 ldc Lysine/ornithine decarboxylase Selenomonas ruminantium
A0A1S4AUX8 8.04e-11 67 23 13 390 2 ODC1A Ornithine decarboxylase 1A, chloroplastic Nicotiana tabacum
Q9FPK5 2.62e-10 65 22 11 389 1 ODC Ornithine decarboxylase, chloroplastic Nicotiana glutinosa
P93351 3.82e-10 65 21 12 389 2 ODC1B Ornithine decarboxylase 1B, chloroplastic Nicotiana tabacum
E0WN94 1.63e-09 63 22 13 391 2 ODC Ornithine decarboxylase, chloroplastic Nicotiana glauca
Q9UQW9 9.67e-09 60 23 11 356 2 spe1 Ornithine decarboxylase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P50134 1.1e-08 60 21 16 392 2 None Ornithine decarboxylase Datura stramonium
O22616 7.63e-08 57 21 13 390 2 ODC Ornithine decarboxylase Solanum lycopersicum
P40807 1.43e-07 57 22 14 367 2 Odc1 Ornithine decarboxylase 1 Drosophila melanogaster
P27121 2.77e-07 56 21 14 403 2 spe-1 Ornithine decarboxylase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
P08432 4.61e-07 55 21 14 380 1 SPE1 Ornithine decarboxylase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P49725 1.32e-05 50 22 14 356 2 ODC Ornithine decarboxylase Panagrellus redivivus
P27116 4.57e-05 49 25 14 298 1 None Ornithine decarboxylase Leishmania donovani
O35484 7.08e-05 48 22 15 376 1 Azin1 Antizyme inhibitor 1 Mus musculus
Q5MNI5 0.000159 47 22 16 358 2 lolD1 Amino acid decarboxylase lolD1 Epichloe uncinata
Q9I8S4 0.000202 47 21 15 375 2 azin2 Antizyme inhibitor 2 Xenopus laevis
P27119 0.000203 47 24 12 254 2 Odc1 Ornithine decarboxylase Mus pahari
P09057 0.000349 46 24 12 254 1 Odc1 Ornithine decarboxylase Rattus norvegicus
P00860 0.000413 46 23 11 254 1 Odc1 Ornithine decarboxylase Mus musculus
P07805 0.000642 45 22 18 411 1 None Ornithine decarboxylase Trypanosoma brucei brucei

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01660
Feature type CDS
Gene lysA
Product diaminopimelate decarboxylase
Location 395217 - 396461 (strand: 1)
Length 1245 (nucleotides) / 414 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2010
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0019 Amino acid transport and metabolism (E) E Diaminopimelate decarboxylase

Kegg Ortholog Annotation(s)

Protein Sequence

MMTTSNNAILSQLAQTYGTPLWIYQGETISEHIEQLKAFDVVRFAQKACSNIHILRLMKQQGVKVDSVSLGEIERALVAGFQGGRERSEIIFTADLLDEKTIERVVELDIPVNAGSIDMLRQLGERHQGHAVWIRINPGFGHGHSQKTNTGGENSKHGIWYEDVPEALAVINQYNLSLVGFHMHIGSGVDYQHLASVCDAMVEQVLTSNVDIKAISAGGGLSTPYQQGDKRVDLNHYFSLWDSARQRIAQHLGHDIELEIEPGRFLVAESGVLVSQVRAVKSMGNRHYVLVDAGFSDLMRPAMYGSYHQITLLDKYGQLKSSEFQQETIVAGPLCESGDVFTQQEGGMVAPRLLPPAEVGDYLVIHDTGAYGASMSSNYNSRPLIPEVLISQGIPQLIRRRQTIEELLALEINL

Flanking regions ( +/- flanking 50bp)

CTTTAATTGCTTAATAATATTTTTATTCACCCTACATTGCTGAGTAAAAAATGATGACAACATCCAACAATGCGATCCTATCTCAATTAGCACAAACTTATGGCACGCCATTATGGATCTATCAAGGTGAGACTATTTCTGAACATATTGAGCAATTAAAAGCCTTTGATGTGGTTCGTTTTGCACAAAAAGCCTGCTCTAACATTCATATTTTACGGTTAATGAAACAGCAGGGCGTTAAAGTTGATTCTGTCTCACTAGGTGAAATTGAGCGGGCGTTGGTTGCCGGTTTCCAAGGTGGTCGCGAGCGTAGTGAAATTATCTTTACCGCAGATTTACTCGATGAAAAAACGATTGAACGTGTGGTTGAATTAGATATTCCGGTTAATGCAGGTTCTATTGATATGCTTCGCCAACTTGGAGAACGTCATCAAGGGCACGCGGTGTGGATAAGAATAAATCCTGGGTTTGGTCATGGACATAGCCAAAAGACCAATACGGGTGGGGAAAATAGCAAACATGGTATTTGGTATGAAGATGTGCCAGAAGCATTAGCGGTAATTAATCAATACAATTTGAGTTTGGTTGGTTTCCATATGCATATTGGCTCAGGGGTTGATTATCAGCATTTAGCGAGTGTCTGTGATGCAATGGTTGAGCAAGTACTCACCTCTAATGTTGATATTAAAGCCATCTCGGCCGGTGGGGGATTGTCAACACCTTATCAGCAAGGAGATAAAAGAGTCGATTTAAACCACTATTTCTCTTTATGGGATAGTGCTCGTCAACGTATAGCGCAACACCTTGGGCATGATATTGAACTGGAAATTGAACCAGGACGCTTTTTAGTGGCTGAGTCTGGCGTGTTAGTGTCACAAGTAAGGGCGGTTAAGTCGATGGGAAATCGTCATTATGTGCTGGTGGATGCAGGGTTTAGTGATTTAATGCGCCCAGCTATGTATGGTAGTTACCATCAAATCACATTATTAGATAAATACGGCCAATTAAAATCTAGCGAGTTTCAACAAGAAACCATAGTTGCGGGGCCTCTTTGTGAATCTGGTGATGTGTTTACCCAGCAAGAAGGAGGAATGGTTGCTCCTCGTTTATTACCTCCGGCAGAAGTTGGTGATTACTTAGTTATTCATGATACGGGGGCTTATGGTGCATCAATGTCATCTAACTATAATAGTCGTCCCCTTATTCCTGAAGTGTTAATTTCACAGGGCATACCTCAATTAATTAGACGTCGTCAAACCATTGAAGAGCTATTAGCGCTAGAAATTAACCTGTAACTTTTACTATTCCTCCCAGTGTGATCATCTCCCAATAAAAAACACCTCAT