PF02311


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02311, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 23 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02311
Description AraC-like ligand binding domain

Occurence in the database

PF02311 is associated with 23 different proteins (see tab "Protein list" and "Profile")
The 23 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2576 FBDBKF_02825 260709 261545 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
1 group_1525 FBDBKF_09850 67169 67933 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
2 group_1919 FBDBKF_14280 55590 56366 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
3 group_2576 EHELCC_03295 648529 649365 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
4 group_1525 EHELCC_04650 259134 259898 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
5 group_1919 EHELCC_08000 60619 61395 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
6 group_2576 NLDBIP_00165 30771 31607 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
7 group_1525 NLDBIP_04650 258930 259694 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
8 group_1919 NLDBIP_08325 60619 61395 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
9 group_2576 LHKJJB_01870 361078 361914 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
10 group_1919 LHKJJB_05940 195764 196540 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
11 group_1525 LHKJJB_13980 75684 76448 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
12 group_2576 HKOGLL_01910 366589 367425 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
13 group_1919 HKOGLL_04975 45210 45986 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
14 group_1525 HKOGLL_12555 67950 68714 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
15 group_1525 F4V73_RS00495 104430 105194 1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
16 group_1919 F4V73_RS02630 554112 554885 1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
17 group_34 F4V73_RS04870 1035579 1036391 1 AraC family transcriptional regulator Morganella psychrotolerans
18 group_2576 F4V73_RS05265 1120695 1121543 1 AraC family transcriptional regulator Morganella psychrotolerans
19 group_304 F4V73_RS12515 94575 95351 -1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
20 group_304 F4V73_RS12930 193914 194699 1 helix-turn-helix transcriptional regulator Morganella psychrotolerans
21 group_1525 PMI_RS02770 607523 608284 1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320
22 group_304 PMI_RS14650 3246053 3246823 -1 helix-turn-helix transcriptional regulator Proteus mirabilis HI4320