PF01042


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01042, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 25 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01042
Description Endoribonuclease L-PSP

Occurence in the database

PF01042 is associated with 25 different proteins (see tab "Protein list" and "Profile")
The 25 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_648 FBDBKF_02205 131507 131851 -1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S1
1 group_683 FBDBKF_02615 221641 222129 -1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S1
2 group_191 FBDBKF_08800 140523 140909 -1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Morganella morganii S1
3 group_3746 FBDBKF_12540 23034 23438 1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S1
4 group_648 EHELCC_02675 519327 519671 -1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S2
5 group_683 EHELCC_03085 609461 609949 -1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S2
6 group_191 EHELCC_12725 22816 23202 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Morganella morganii S2
7 group_683 NLDBIP_00375 70187 70675 1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S4
8 group_648 NLDBIP_00785 160465 160809 1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S4
9 group_191 NLDBIP_13065 22816 23202 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Morganella morganii S4
10 group_648 LHKJJB_01250 231876 232220 -1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S3
11 group_683 LHKJJB_01660 322010 322498 -1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S3
12 group_191 LHKJJB_13490 139241 139627 -1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Morganella morganii S3
13 group_648 HKOGLL_01290 237387 237731 -1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S5
14 group_683 HKOGLL_01700 327521 328009 -1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family Morganella morganii S5
15 group_191 HKOGLL_11540 22816 23202 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Morganella morganii S5
16 group_648 F4V73_RS04575 968215 968559 -1 RidA family protein Morganella psychrotolerans
17 group_683 F4V73_RS05075 1081725 1082213 -1 RidA family protein Morganella psychrotolerans
18 group_3746 F4V73_RS07775 1622977 1623381 1 RidA family protein Morganella psychrotolerans
19 group_191 F4V73_RS10020 111087 111476 -1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Morganella psychrotolerans
20 group_648 PMI_RS05605 1222590 1222934 -1 RidA family protein Proteus mirabilis HI4320
21 group_191 PMI_RS05960 1308363 1308761 -1 RidA family protein Proteus mirabilis HI4320
22 group_683 PMI_RS13995 3107020 3107517 -1 RidA family protein Proteus mirabilis HI4320
23 group_191 PMI_RS17070 3756944 3757321 1 RidA family protein Proteus mirabilis HI4320
24 group_191 PMI_RS17210 3780791 3781177 -1 RidA family protein Proteus mirabilis HI4320