Homologs in group_3746

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS07775 F4V73_RS07775 86.6 Morganella psychrotolerans - RidA family protein

Distribution of the homologs in the orthogroup group_3746

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3746

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A0A1J1DL12 6.05e-11 58 35 5 117 1 MAG133 2-iminobutanoate/2-iminopropanoate deaminase Dermatophagoides farinae
Q8U308 1.99e-08 52 37 4 102 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q973T6 3.28e-08 52 35 5 111 1 STK_08110 RutC family protein STK_08110 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
O58584 3.41e-08 52 36 4 102 1 PH0854 RutC family protein PH0854 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9UZA3 2.46e-07 49 34 4 102 3 PYRAB12510 RutC family protein PYRAB12510 Pyrococcus abyssi (strain GE5 / Orsay)
P52758 3.18e-07 49 33 5 106 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Homo sapiens
P80601 7.48e-07 48 35 5 106 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Capra hircus
Q97U19 1.07e-06 47 37 5 99 3 SSO3206 RutC family protein SSO3206 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q6FFZ5 1.21e-06 47 33 3 107 3 rutC 3-aminoacrylate deaminase RutC Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q3T114 1.99e-06 47 34 5 106 2 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Bos taurus
P52759 3.08e-06 47 33 5 106 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Rattus norvegicus
P52760 9.42e-06 45 32 6 116 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Mus musculus
Q9V3W0 1.43e-05 45 29 4 105 2 UK114 RutC family protein UK114 Drosophila melanogaster
B7N3G6 1.57e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q10121 1.87e-05 45 32 4 115 3 C23G10.2 RutC family protein C23G10.2 Caenorhabditis elegans
Q32HQ1 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Shigella dysenteriae serotype 1 (strain Sd197)
Q1RDK7 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain UTI89 / UPEC)
B1LIZ5 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain SMS-3-5 / SECEC)
D2NGI7 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O150:H5 (strain SE15)
P0AFQ5 2.17e-05 44 29 3 98 1 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12)
B1IV87 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0AFQ6 2.17e-05 44 29 3 98 1 rutC 3-aminoacrylate deaminase RutC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TJ57 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O6:K15:H31 (strain 536 / UPEC)
D5CZH0 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC)
A1A9R5 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O1:K1 / APEC
A7ZYW5 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O9:H4 (strain HS)
B1X9D1 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12 / DH10B)
C9QZ66 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIMB 12045 / K12 / DH1)
C4ZQD8 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12 / MC4100 / BW2952)
C6UFC1 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain B / REL606)
C6EHJ7 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain B / BL21-DE3)
B7M8Z5 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O8 (strain IAI1)
B7MTF3 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O81 (strain ED1a)
B7NLB6 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MIF7 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O45:K1 (strain S88 / ExPEC)
D3H123 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O44:H18 (strain 042 / EAEC)
B7UNZ3 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZKB5 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O139:H28 (strain E24377A / ETEC)
C8U5H2 2.17e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O103:H2 (strain 12009 / EHEC)
Q83LK7 2.45e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri
Q0T624 2.45e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri serotype 5b (strain 8401)
D2AC41 2.45e-05 44 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri serotype X (strain 2002017)
A7ME54 3.02e-05 44 30 3 98 3 rutC 3-aminoacrylate deaminase RutC Cronobacter sakazakii (strain ATCC BAA-894)
O66689 4.14e-05 43 28 3 115 3 aq_364 RutC family protein aq_364 Aquifex aeolicus (strain VF5)
D3QPK3 4.57e-05 43 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O55:H7 (strain CB9615 / EPEC)
Q8XAU5 4.57e-05 43 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O157:H7
B6I986 7.27e-05 43 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain SE11)
B7LFC0 7.49e-05 43 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain 55989 / EAEC)
C8TNC0 7.49e-05 43 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O26:H11 (strain 11368 / EHEC)
C8UMM6 7.49e-05 43 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O111:H- (strain 11128 / EHEC)
B9JLT7 7.61e-05 43 29 3 98 3 rutC 3-aminoacrylate deaminase RutC Rhizobium rhizogenes (strain K84 / ATCC BAA-868)
Q9UR06 0.000101 42 28 4 115 3 mmf2 Protein mmf2, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q7CWX2 0.000145 42 30 3 98 3 rutC 3-aminoacrylate deaminase RutC Agrobacterium fabrum (strain C58 / ATCC 33970)
P40037 0.000241 41 31 2 90 1 HMF1 Protein HMF1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
D3RKL2 0.000372 41 30 3 102 3 rutC 3-aminoacrylate deaminase RutC Klebsiella variicola (strain At-22)
B5XXN2 0.000421 40 30 3 102 3 rutC 3-aminoacrylate deaminase RutC Klebsiella pneumoniae (strain 342)
A6T7A0 0.000511 40 30 3 102 3 rutC 3-aminoacrylate deaminase RutC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
D4GEU6 0.000812 40 33 3 104 3 rutC 3-aminoacrylate deaminase RutC Pantoea ananatis (strain LMG 20103)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_12540
Feature type CDS
Gene ridA
Product Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
Location 23034 - 23438 (strand: 1)
Length 405 (nucleotides) / 134 (amino acids)

Contig

Accession contig_15
Length 114235 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3746
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF01042 Endoribonuclease L-PSP

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0251 Defense mechanisms (V) V Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09022 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Protein Sequence

MTIKRINPPSLFNSLQYGFSQVVETTGTRQLFLSGQVGVDHNEVTIAGGMREQAAQSVDNITRALAAAGGSLSDVVMLRIYIRAGADSHDEQMAIADVLKEKFADNAPASSWIIVSGLSLPEWLIEIEAHAVLP

Flanking regions ( +/- flanking 50bp)

AATCTATGATAAAACGACATTTCTTTTATTTCACTACTGAAAAGGCTGTTATGACTATAAAACGGATTAATCCGCCCTCACTGTTTAATTCCCTGCAATACGGTTTCAGTCAGGTCGTGGAAACAACCGGCACCCGGCAGTTATTTCTGTCAGGACAGGTCGGCGTTGATCATAATGAAGTGACAATCGCAGGCGGTATGCGGGAACAAGCCGCACAATCGGTGGACAATATTACCCGTGCCCTCGCGGCAGCCGGCGGTTCTCTGTCTGATGTGGTTATGCTGCGGATTTATATCCGTGCCGGCGCAGATTCGCACGATGAACAAATGGCAATTGCGGATGTGCTGAAAGAAAAATTTGCAGATAATGCCCCCGCCTCATCATGGATTATTGTCAGCGGATTATCACTGCCCGAATGGCTGATTGAAATCGAAGCTCACGCCGTGCTGCCGTAACCGGAAGGCGCTGTACAGCGCCTGATTTGCATGATATTGATTACGTGAAT