Homologs in group_683

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02615 FBDBKF_02615 73.9 Morganella morganii S1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
EHELCC_03085 EHELCC_03085 73.9 Morganella morganii S2 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
NLDBIP_00375 NLDBIP_00375 73.9 Morganella morganii S4 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
LHKJJB_01660 LHKJJB_01660 73.9 Morganella morganii S3 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
HKOGLL_01700 HKOGLL_01700 73.9 Morganella morganii S5 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
F4V73_RS05075 F4V73_RS05075 77.6 Morganella psychrotolerans - RidA family protein

Distribution of the homologs in the orthogroup group_683

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_683

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O25598 1.66e-10 58 34 5 140 3 HP_0944 RutC family protein HP_0944 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9UZA3 1.14e-09 56 32 6 129 3 PYRAB12510 RutC family protein PYRAB12510 Pyrococcus abyssi (strain GE5 / Orsay)
Q9ZKQ6 1.23e-09 56 33 5 140 3 jhp_0879 RutC family protein jhp_0879 Helicobacter pylori (strain J99 / ATCC 700824)
Q8U308 1.94e-09 55 35 7 129 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P37552 1.94e-09 55 35 5 117 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Bacillus subtilis (strain 168)
O58584 4.2e-09 55 34 7 129 1 PH0854 RutC family protein PH0854 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q97U19 9.39e-09 54 32 5 127 3 SSO3206 RutC family protein SSO3206 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q9KWS2 2.42e-08 53 28 4 134 1 amnD 2-aminomuconate deaminase Pseudomonas sp.
P71394 5.51e-08 52 28 4 128 3 HI_1627 RutC family protein HI_1627 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P97117 1.54e-07 50 27 4 129 3 None RutC family protein in leuC 5'region Leuconostoc mesenteroides subsp. cremoris
P44839 5.97e-07 49 31 5 129 1 HI_0719 RutC family protein HI_0719 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P52760 9.63e-07 48 34 7 129 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Mus musculus
Q94JQ4 1.14e-06 49 36 7 128 1 RIDA Reactive Intermediate Deaminase A, chloroplastic Arabidopsis thaliana
Q6FFZ5 1.35e-06 48 28 4 127 3 rutC 3-aminoacrylate deaminase RutC Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q9L6B5 9.97e-06 46 28 5 130 3 PM1466 RutC family protein PM1466 Pasteurella multocida (strain Pm70)
P57452 1.15e-05 45 31 6 130 3 BU371 RutC family protein BU371 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
B1M5I6 2e-05 45 28 4 129 3 rutC 3-aminoacrylate deaminase RutC Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1)
P52761 2.2e-05 45 30 6 130 3 slr0709 RutC family protein slr0709 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
D0LI57 2.2e-05 45 29 4 116 3 rutC 3-aminoacrylate deaminase RutC Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
P40037 2.82e-05 44 33 4 104 1 HMF1 Protein HMF1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P52758 3.1e-05 45 30 6 129 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Homo sapiens
Q7CP78 5.06e-05 44 30 5 117 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AF95 8.49e-05 43 28 5 118 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Shigella flexneri
P0AF93 8.49e-05 43 28 5 118 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli (strain K12)
P0AF94 8.49e-05 43 28 5 118 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
O30825 0.0001 43 27 4 121 3 HD_0322 RutC family protein HD_0322 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
D5VGV2 0.000101 43 27 4 129 3 rutC 3-aminoacrylate deaminase RutC Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059)
Q8K9H7 0.000207 42 27 6 129 3 BUsg_359 RutC family protein BUsg_359 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A8IAD2 0.000243 42 29 5 129 3 rutC 3-aminoacrylate deaminase RutC Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
P40431 0.000273 42 31 7 124 3 None RutC family protein in vnfA 5'region Azotobacter vinelandii
Q89AG0 0.000808 40 27 5 129 3 bbp_334 RutC family protein bbp_334 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13995
Feature type CDS
Gene -
Product RidA family protein
Location 3107020 - 3107517 (strand: -1)
Length 498 (nucleotides) / 165 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_683
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01042 Endoribonuclease L-PSP

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0251 Defense mechanisms (V) V Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09022 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Protein Sequence

MRYKSLLVALPFVFGVASANAAENVVHHKLDGMPISEAVEINAGNNLVFLSGKVPTKKSADAPEGELASYGNTEEQTINVLEQIKTNLNNLGLDMKDVVKMQVFLVGGEENNGTMDFKGFMNGYSKFYDASKTNQLPARSAFQVAKLANPAWRVEIEVIAVRPAK

Flanking regions ( +/- flanking 50bp)

TAAGAAGTAAACCCTTGTTTTACTGTAATTAAACACATTAAGGAGTTTTCATGCGCTATAAAAGTCTACTTGTTGCTTTACCTTTCGTGTTCGGTGTAGCAAGTGCAAATGCAGCGGAGAATGTTGTGCATCATAAATTAGACGGTATGCCTATTTCAGAAGCAGTTGAAATTAATGCAGGTAATAATCTGGTTTTCTTAAGTGGTAAAGTGCCTACTAAGAAATCCGCAGATGCACCAGAAGGTGAATTAGCTTCTTACGGTAATACCGAAGAACAAACTATTAATGTTTTAGAACAAATCAAAACTAACCTGAATAACCTTGGTCTTGATATGAAAGACGTGGTTAAGATGCAAGTATTCTTAGTTGGTGGTGAAGAGAATAACGGCACTATGGATTTTAAAGGCTTTATGAACGGTTATTCTAAGTTCTATGACGCTTCAAAAACCAATCAATTACCAGCACGTTCAGCATTCCAAGTGGCTAAGTTGGCTAATCCAGCATGGCGTGTAGAAATTGAAGTGATTGCAGTTCGTCCTGCTAAATAAAGACCCCCTGTATTTTACCTTATTTTAAGGTAAACCAATTTTATAAAACG