Homologs in group_191

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08800 FBDBKF_08800 30.9 Morganella morganii S1 ridA 2-iminobutanoate/2-iminopropanoate deaminase
EHELCC_12725 EHELCC_12725 30.9 Morganella morganii S2 ridA 2-iminobutanoate/2-iminopropanoate deaminase
NLDBIP_13065 NLDBIP_13065 30.9 Morganella morganii S4 ridA 2-iminobutanoate/2-iminopropanoate deaminase
LHKJJB_13490 LHKJJB_13490 30.9 Morganella morganii S3 ridA 2-iminobutanoate/2-iminopropanoate deaminase
HKOGLL_11540 HKOGLL_11540 30.9 Morganella morganii S5 ridA 2-iminobutanoate/2-iminopropanoate deaminase
F4V73_RS10020 F4V73_RS10020 29.3 Morganella psychrotolerans ridA 2-iminobutanoate/2-iminopropanoate deaminase
PMI_RS17070 PMI_RS17070 30.3 Proteus mirabilis HI4320 - RidA family protein
PMI_RS17210 PMI_RS17210 27.6 Proteus mirabilis HI4320 - RidA family protein

Distribution of the homologs in the orthogroup group_191

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_191

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8U308 5.29e-21 84 38 0 119 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O58584 4.47e-20 82 37 0 119 1 PH0854 RutC family protein PH0854 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9UZA3 4.35e-18 77 33 0 119 3 PYRAB12510 RutC family protein PYRAB12510 Pyrococcus abyssi (strain GE5 / Orsay)
O52178 1.92e-15 70 32 1 112 3 dfrA Protein DfrA Myxococcus xanthus
O66689 1.12e-14 68 35 3 118 3 aq_364 RutC family protein aq_364 Aquifex aeolicus (strain VF5)
P52758 4.99e-14 67 30 1 128 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Homo sapiens
Q94JQ4 6.82e-14 68 33 0 108 1 RIDA Reactive Intermediate Deaminase A, chloroplastic Arabidopsis thaliana
A0A1J1DL12 1.57e-13 65 28 0 114 1 MAG133 2-iminobutanoate/2-iminopropanoate deaminase Dermatophagoides farinae
P37552 6.04e-13 64 32 1 110 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Bacillus subtilis (strain 168)
P40431 1.84e-12 62 26 0 110 3 None RutC family protein in vnfA 5'region Azotobacter vinelandii
Q10121 6.29e-12 62 31 2 129 3 C23G10.2 RutC family protein C23G10.2 Caenorhabditis elegans
P52759 8.4e-12 61 28 1 128 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Rattus norvegicus
P57452 2.96e-11 59 33 3 120 3 BU371 RutC family protein BU371 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q3T114 3.6e-11 59 28 1 128 2 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Bos taurus
P0AGL4 4.72e-11 59 30 4 127 3 tdcF Putative reactive intermediate deaminase TdcF Shigella flexneri
P0AGL2 4.72e-11 59 30 4 127 1 tdcF Putative reactive intermediate deaminase TdcF Escherichia coli (strain K12)
P0AGL3 4.72e-11 59 30 4 127 3 tdcF Putative reactive intermediate deaminase TdcF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P40037 4.93e-11 59 31 1 99 1 HMF1 Protein HMF1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q97U19 6.43e-11 58 31 0 112 3 SSO3206 RutC family protein SSO3206 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
P80601 7.04e-11 58 28 1 128 1 RIDA 2-iminobutanoate/2-iminopropanoate deaminase Capra hircus
P40185 7.18e-11 59 27 1 113 1 MMF1 Protein MMF1, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q89AG0 7.31e-11 58 29 2 118 3 bbp_334 RutC family protein bbp_334 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9H7 1.01e-10 58 30 2 127 3 BUsg_359 RutC family protein BUsg_359 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q973T6 1.12e-10 58 27 0 118 1 STK_08110 RutC family protein STK_08110 Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
P55654 1.13e-10 58 30 3 117 3 NGR_a01620 RutC family protein y4sK Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q7CP78 1.46e-10 58 30 4 133 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P52760 1.48e-10 58 27 1 128 1 Rida 2-iminobutanoate/2-iminopropanoate deaminase Mus musculus
O25598 5.46e-10 56 28 0 111 3 HP_0944 RutC family protein HP_0944 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9V3W0 6.17e-10 56 28 0 112 2 UK114 RutC family protein UK114 Drosophila melanogaster
Q9ZKQ6 6.2e-10 56 28 0 111 3 jhp_0879 RutC family protein jhp_0879 Helicobacter pylori (strain J99 / ATCC 700824)
Q6FFZ5 3.04e-09 54 26 0 115 3 rutC 3-aminoacrylate deaminase RutC Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P0AF95 3.1e-09 54 30 4 133 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Shigella flexneri
P0AF93 3.1e-09 54 30 4 133 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli (strain K12)
P0AF94 3.1e-09 54 30 4 133 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P97117 3.19e-09 54 26 2 125 3 None RutC family protein in leuC 5'region Leuconostoc mesenteroides subsp. cremoris
O43003 7.05e-09 54 28 2 117 3 mmf1 Protein mmf1, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9KWS2 1.31e-08 53 27 3 131 1 amnD 2-aminomuconate deaminase Pseudomonas sp.
Q9UR06 4.27e-08 51 30 3 115 3 mmf2 Protein mmf2, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P52761 4.5e-08 51 26 2 115 3 slr0709 RutC family protein slr0709 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A8IAD2 2.12e-07 49 30 2 112 3 rutC 3-aminoacrylate deaminase RutC Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
Q9L6B5 2.58e-07 49 31 3 116 3 PM1466 RutC family protein PM1466 Pasteurella multocida (strain Pm70)
O34133 1.27e-06 47 27 1 121 3 aldR Putative regulator AldR Lactococcus lactis subsp. lactis (strain IL1403)
D5CE34 4.54e-06 46 31 2 83 3 rutC 3-aminoacrylate deaminase RutC Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCTC 10005 / WDCM 00083 / NCDC 279-56)
A4W923 4.64e-06 46 31 2 83 3 rutC 3-aminoacrylate deaminase RutC Enterobacter sp. (strain 638)
P44839 4.74e-06 46 27 4 119 1 HI_0719 RutC family protein HI_0719 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B0SW61 5.07e-06 46 24 0 111 3 rutC 3-aminoacrylate deaminase RutC Caulobacter sp. (strain K31)
A6T7A0 5.43e-06 46 29 2 96 3 rutC 3-aminoacrylate deaminase RutC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XXN2 6.03e-06 45 29 2 96 3 rutC 3-aminoacrylate deaminase RutC Klebsiella pneumoniae (strain 342)
D3RKL2 6.22e-06 45 29 2 96 3 rutC 3-aminoacrylate deaminase RutC Klebsiella variicola (strain At-22)
D0LI57 1e-05 45 27 0 98 3 rutC 3-aminoacrylate deaminase RutC Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)
Q83LK7 1.74e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri
Q0T624 1.74e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri serotype 5b (strain 8401)
D2AC41 1.74e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Shigella flexneri serotype X (strain 2002017)
Q32HQ1 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Shigella dysenteriae serotype 1 (strain Sd197)
Q1RDK7 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain UTI89 / UPEC)
B1LIZ5 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain SMS-3-5 / SECEC)
D2NGI7 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O150:H5 (strain SE15)
P0AFQ5 2.03e-05 44 30 2 83 1 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12)
B1IV87 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0AFQ6 2.03e-05 44 30 2 83 1 rutC 3-aminoacrylate deaminase RutC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TJ57 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O6:K15:H31 (strain 536 / UPEC)
D5CZH0 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC)
A1A9R5 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O1:K1 / APEC
A7ZYW5 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O9:H4 (strain HS)
B1X9D1 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12 / DH10B)
C9QZ66 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIMB 12045 / K12 / DH1)
C4ZQD8 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain K12 / MC4100 / BW2952)
C6UFC1 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain B / REL606)
C6EHJ7 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain B / BL21-DE3)
B7M8Z5 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O8 (strain IAI1)
B7MTF3 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O81 (strain ED1a)
B7NLB6 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7MIF7 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O45:K1 (strain S88 / ExPEC)
D3H123 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O44:H18 (strain 042 / EAEC)
B7UNZ3 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZKB5 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O139:H28 (strain E24377A / ETEC)
C8U5H2 2.03e-05 44 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O103:H2 (strain 12009 / EHEC)
C9Y0S5 2.52e-05 44 31 2 83 3 rutC 3-aminoacrylate deaminase RutC Cronobacter turicensis (strain DSM 18703 / CCUG 55852 / LMG 23827 / z3032)
B9JLT7 4e-05 43 27 0 87 3 rutC 3-aminoacrylate deaminase RutC Rhizobium rhizogenes (strain K84 / ATCC BAA-868)
D3QPK3 4.41e-05 43 29 2 84 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O55:H7 (strain CB9615 / EPEC)
Q8XAU5 4.41e-05 43 29 2 84 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O157:H7
Q7CWX2 5.37e-05 43 26 0 93 3 rutC 3-aminoacrylate deaminase RutC Agrobacterium fabrum (strain C58 / ATCC 33970)
B7N3G6 5.43e-05 43 28 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7LFC0 7.55e-05 42 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain 55989 / EAEC)
C8TNC0 7.55e-05 42 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O26:H11 (strain 11368 / EHEC)
C8UMM6 7.55e-05 42 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli O111:H- (strain 11128 / EHEC)
D4GEU6 8.04e-05 42 28 0 82 3 rutC 3-aminoacrylate deaminase RutC Pantoea ananatis (strain LMG 20103)
A7ME54 8.89e-05 42 30 2 83 3 rutC 3-aminoacrylate deaminase RutC Cronobacter sakazakii (strain ATCC BAA-894)
B8H1Q2 0.000137 42 24 0 111 3 rutC 3-aminoacrylate deaminase RutC Caulobacter vibrioides (strain NA1000 / CB15N)
Q9A4N4 0.000137 42 24 0 111 3 rutC 3-aminoacrylate deaminase RutC Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
B6I986 0.000139 42 28 2 83 3 rutC 3-aminoacrylate deaminase RutC Escherichia coli (strain SE11)
D5VGV2 0.000206 41 24 0 111 3 rutC 3-aminoacrylate deaminase RutC Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059)
Q48MQ6 0.000411 40 28 0 81 3 rutC 3-aminoacrylate deaminase RutC Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
A1JMX4 0.000671 40 27 2 96 3 rutC 3-aminoacrylate deaminase RutC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
B1M5I6 0.000749 40 23 0 100 3 rutC 3-aminoacrylate deaminase RutC Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05960
Feature type CDS
Gene -
Product RidA family protein
Location 1308363 - 1308761 (strand: -1)
Length 399 (nucleotides) / 132 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_191
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF01042 Endoribonuclease L-PSP

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0251 Defense mechanisms (V) V Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09022 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Protein Sequence

MSSHLVMQNIEALTSPGGHYSHVVTANNMSFISGLLPLDKNGVPLTDKPIEFQINQVLENLNACLIGIKAQKTDIAQVKMYITDINEWPVVNELYAKWIGEHKPARLVAGVKELHFGSKIEIEAMVIKEQTL

Flanking regions ( +/- flanking 50bp)

GTATAAGTTGTTATACATTTAATCTAACCAGAGTGAAATAGGAAAATACTATGAGTTCACATCTTGTGATGCAAAATATTGAAGCTCTTACATCGCCAGGGGGTCACTACTCTCATGTTGTTACAGCCAATAATATGTCCTTTATTTCAGGCCTATTACCTTTAGATAAAAACGGCGTGCCATTAACGGATAAACCTATTGAATTTCAAATTAATCAAGTGCTTGAAAATTTAAACGCTTGCCTTATAGGAATAAAAGCACAAAAAACCGATATTGCCCAAGTTAAGATGTATATTACAGACATTAACGAATGGCCTGTTGTCAATGAGTTATATGCAAAATGGATTGGTGAGCATAAACCGGCCAGATTAGTCGCGGGCGTAAAAGAGCTTCATTTTGGCAGTAAAATTGAAATTGAAGCCATGGTGATCAAGGAGCAAACTTTATGAATAAATTAGCGCTTCCTACTTACCCAGATGTGGTTGAAGCACATCAACGT