Homologs in group_683

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02615 FBDBKF_02615 90.1 Morganella morganii S1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
EHELCC_03085 EHELCC_03085 90.1 Morganella morganii S2 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
NLDBIP_00375 NLDBIP_00375 90.1 Morganella morganii S4 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
LHKJJB_01660 LHKJJB_01660 90.1 Morganella morganii S3 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
HKOGLL_01700 HKOGLL_01700 90.1 Morganella morganii S5 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
PMI_RS13995 PMI_RS13995 77.6 Proteus mirabilis HI4320 - RidA family protein

Distribution of the homologs in the orthogroup group_683

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_683

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O25598 2.71e-10 58 33 4 139 3 HP_0944 RutC family protein HP_0944 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKQ6 3.07e-10 58 33 4 139 3 jhp_0879 RutC family protein jhp_0879 Helicobacter pylori (strain J99 / ATCC 700824)
O52178 7.48e-09 54 33 5 129 3 dfrA Protein DfrA Myxococcus xanthus
Q9UZA3 8.61e-08 51 30 5 130 3 PYRAB12510 RutC family protein PYRAB12510 Pyrococcus abyssi (strain GE5 / Orsay)
Q97U19 9.47e-08 51 32 5 129 3 SSO3206 RutC family protein SSO3206 Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
P44839 1.34e-07 51 31 5 119 1 HI_0719 RutC family protein HI_0719 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q7CP78 2.55e-07 50 31 5 118 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8U308 2.79e-07 50 31 5 118 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q9KWS2 1.67e-06 48 32 2 93 1 amnD 2-aminomuconate deaminase Pseudomonas sp.
P0AF95 2.28e-06 47 31 5 119 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Shigella flexneri
P0AF93 2.28e-06 47 31 5 119 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli (strain K12)
P0AF94 2.28e-06 47 31 5 119 3 yjgF 2-iminobutanoate/2-iminopropanoate deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGL4 2.91e-06 47 26 4 142 3 tdcF Putative reactive intermediate deaminase TdcF Shigella flexneri
P0AGL2 2.91e-06 47 26 4 142 1 tdcF Putative reactive intermediate deaminase TdcF Escherichia coli (strain K12)
P0AGL3 2.91e-06 47 26 4 142 3 tdcF Putative reactive intermediate deaminase TdcF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9L6B5 3.68e-06 47 28 5 119 3 PM1466 RutC family protein PM1466 Pasteurella multocida (strain Pm70)
O58584 4.52e-06 47 29 5 118 1 PH0854 RutC family protein PH0854 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P52761 6e-06 46 30 6 131 3 slr0709 RutC family protein slr0709 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O30825 4.04e-05 44 27 4 125 3 HD_0322 RutC family protein HD_0322 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
P71394 4.05e-05 44 26 4 129 3 HI_1627 RutC family protein HI_1627 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37552 4.73e-05 44 31 5 117 1 ridA 2-iminobutanoate/2-iminopropanoate deaminase Bacillus subtilis (strain 168)
P97117 0.000147 42 29 4 120 3 None RutC family protein in leuC 5'region Leuconostoc mesenteroides subsp. cremoris
Q8K9H7 0.000318 42 25 6 130 3 BUsg_359 RutC family protein BUsg_359 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P40037 0.000387 41 31 3 103 1 HMF1 Protein HMF1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O34133 0.000691 40 39 4 88 3 aldR Putative regulator AldR Lactococcus lactis subsp. lactis (strain IL1403)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05075
Feature type CDS
Gene -
Product RidA family protein
Location 1081725 - 1082213 (strand: -1)
Length 489 (nucleotides) / 162 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_683
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01042 Endoribonuclease L-PSP

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0251 Defense mechanisms (V) V Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09022 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Protein Sequence

MRYKSLLLALPLVWGAANAAEGVVHHKLNGMPISESVEISGNKNIIFLSGKVPAKISKDAPEGVLASYGNTEAQTISVMEQIKAHLAELGLEMKDVVKMQVFLVGGDETNGTMDFAGFMAGYSKFYNDKDSGNALPARSTFQVAKLANPAWRVEIEVTAVRP

Flanking regions ( +/- flanking 50bp)

GCGTTTCAGTTAATTAGTTAATTACCTGCAATATTATAAAGAGGCTCAATATGCGTTATAAAAGTTTACTGTTAGCTCTTCCGTTAGTCTGGGGTGCGGCAAATGCAGCTGAGGGTGTTGTTCATCACAAACTGAACGGCATGCCTATCTCTGAATCTGTGGAAATCAGCGGCAACAAAAACATTATTTTCCTCAGCGGAAAAGTTCCGGCGAAGATTTCAAAAGACGCACCTGAAGGCGTTCTGGCGTCTTACGGCAATACTGAAGCTCAGACCATCAGTGTTATGGAACAAATCAAAGCACATCTGGCTGAATTAGGTCTGGAAATGAAAGATGTGGTGAAAATGCAGGTGTTCCTGGTCGGCGGTGACGAGACTAACGGCACAATGGATTTCGCAGGCTTTATGGCAGGCTATTCCAAATTTTATAACGACAAAGACTCCGGCAATGCATTACCGGCACGCAGTACTTTCCAGGTTGCTAAATTAGCCAACCCGGCATGGCGTGTGGAAATTGAAGTAACCGCAGTACGCCCGTAAGGCGATATATACCCTTATTCATTCAAACCGCAGGTTCGTTGGCTGCATCC