Orthogroup:group_1480


Homologs in group_1480

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08800 FBDBKF_08800 Morganella morganii S1 ridA 2-iminobutanoate/2-iminopropanoate deaminase
EHELCC_12725 EHELCC_12725 Morganella morganii S2 ridA 2-iminobutanoate/2-iminopropanoate deaminase
NLDBIP_13065 NLDBIP_13065 Morganella morganii S4 ridA 2-iminobutanoate/2-iminopropanoate deaminase
LHKJJB_13490 LHKJJB_13490 Morganella morganii S3 ridA 2-iminobutanoate/2-iminopropanoate deaminase
HKOGLL_11540 HKOGLL_11540 Morganella morganii S5 ridA 2-iminobutanoate/2-iminopropanoate deaminase
F4V73_RS10020 F4V73_RS10020 Morganella psychrotolerans ridA 2-iminobutanoate/2-iminopropanoate deaminase
PMI_RS17210 PMI_RS17210 Proteus mirabilis HI4320 - RidA family protein

Distribution of group_1480 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_1480 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1480

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_1480.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ridA 6
2 - 1

Product

# Product Occurence
1 2-iminobutanoate/2-iminopropanoate deaminase 6
2 RidA family protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0251 7 V Defense mechanisms (V) Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K09022 7 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01042 7 Endoribonuclease L-PSP

Annotations of the 107 SwissProt hits

Annotation Number of occurrences
2-aminomuconate deaminase 1
2-iminobutanoate/2-iminopropanoate deaminase 12
3-aminoacrylate deaminase RutC 61
Diphthine--ammonia ligase 1
Protein DfrA 1
Protein HMF1 1
Protein MMF1, mitochondrial 1
Protein mmf1, mitochondrial 1
Protein mmf2, mitochondrial 1
Putative reactive intermediate deaminase TdcF 3
Putative regulator AldR 1
Reactive Intermediate Deaminase A, chloroplastic 1
RutC family protein BU371 1
RutC family protein BUsg_359 1
RutC family protein C23G10.2 1
RutC family protein HD_0322 1
RutC family protein HI_0719 1
RutC family protein HP_0944 1
RutC family protein PH0854 1
RutC family protein PM1466 1
RutC family protein PYRAB12510 1
RutC family protein SSO3206 1
RutC family protein STK_08110 1
RutC family protein UK114 1
RutC family protein YoaB 3
RutC family protein aq_364 1
RutC family protein bbp_334 1
RutC family protein in leuC 5'region 1
RutC family protein in vnfA 5'region 1
RutC family protein jhp_0879 1
RutC family protein slr0709 1
RutC family protein y4sK 1

Protein length

Min length 128
Max length 129
Mean length (sd) 128.1 (0.4)
Median length 128.0

Protein length distribution