PF00929


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00929, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 30 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00929
Description Exonuclease

Occurence in the database

PF00929 is associated with 30 different proteins (see tab "Protein list" and "Profile")
The 30 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_274 FBDBKF_05700 146150 146797 1 rnt ribonuclease T Morganella morganii S1
1 group_1359 FBDBKF_08420 63896 64441 1 orn oligoribonuclease Morganella morganii S1
2 group_1864 FBDBKF_13940 82024 82758 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S1
3 group_1970 FBDBKF_14770 51745 53163 1 sbcB exodeoxyribonuclease I Morganella morganii S1
4 group_1864 EHELCC_11610 166900 167634 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S2
5 group_274 EHELCC_11890 34697 35344 -1 rnt ribonuclease T Morganella morganii S2
6 group_1359 EHELCC_13105 99284 99829 -1 orn oligoribonuclease Morganella morganii S2
7 group_1970 EHELCC_15575 81821 83239 1 sbcB exodeoxyribonuclease I Morganella morganii S2
8 group_1864 NLDBIP_11955 166900 167634 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S4
9 group_274 NLDBIP_12230 34652 35299 -1 rnt ribonuclease T Morganella morganii S4
10 group_1359 NLDBIP_13445 99284 99829 -1 orn oligoribonuclease Morganella morganii S4
11 group_1970 NLDBIP_16105 81821 83239 1 sbcB exodeoxyribonuclease I Morganella morganii S4
12 group_1864 LHKJJB_11815 166900 167634 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S3
13 group_274 LHKJJB_12090 34697 35344 -1 rnt ribonuclease T Morganella morganii S3
14 group_1359 LHKJJB_13110 62614 63159 1 orn oligoribonuclease Morganella morganii S3
15 group_1970 LHKJJB_15735 33447 34865 -1 sbcB exodeoxyribonuclease I Morganella morganii S3
16 group_1864 HKOGLL_10425 166900 167634 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S5
17 group_274 HKOGLL_10705 34697 35344 -1 rnt ribonuclease T Morganella morganii S5
18 group_1359 HKOGLL_11920 99284 99829 -1 orn oligoribonuclease Morganella morganii S5
19 group_1970 HKOGLL_14855 32659 34077 -1 sbcB exodeoxyribonuclease I Morganella morganii S5
20 group_274 F4V73_RS03605 767819 768460 -1 rnt ribonuclease T Morganella psychrotolerans
21 group_1970 F4V73_RS07565 1580621 1582039 1 sbcB exodeoxyribonuclease I Morganella psychrotolerans
22 group_1359 F4V73_RS09630 29852 30397 1 orn oligoribonuclease Morganella psychrotolerans
23 group_1864 F4V73_RS12795 159390 160163 -1 dnaQ DNA polymerase III subunit epsilon Morganella psychrotolerans
24 group_274 F4V73_RS17870 17511 18122 -1 3'-5' exonuclease Morganella psychrotolerans
25 group_1864 PMI_RS01100 271246 272004 1 dnaQ DNA polymerase III subunit epsilon Proteus mirabilis HI4320
26 group_1970 PMI_RS04165 937301 938731 -1 sbcB exodeoxyribonuclease I Proteus mirabilis HI4320
27 group_274 PMI_RS06730 1470217 1470855 1 rnt ribonuclease T Proteus mirabilis HI4320
28 group_4592 PMI_RS12275 2723224 2724129 -1 3'-5' exonuclease Proteus mirabilis HI4320
29 group_1359 PMI_RS16695 3683698 3684243 1 orn oligoribonuclease Proteus mirabilis HI4320