Homologs in group_1864

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13940 FBDBKF_13940 77.8 Morganella morganii S1 dnaQ DNA polymerase III subunit epsilon
EHELCC_11610 EHELCC_11610 77.8 Morganella morganii S2 dnaQ DNA polymerase III subunit epsilon
NLDBIP_11955 NLDBIP_11955 77.8 Morganella morganii S4 dnaQ DNA polymerase III subunit epsilon
LHKJJB_11815 LHKJJB_11815 77.8 Morganella morganii S3 dnaQ DNA polymerase III subunit epsilon
HKOGLL_10425 HKOGLL_10425 77.8 Morganella morganii S5 dnaQ DNA polymerase III subunit epsilon
F4V73_RS12795 F4V73_RS12795 76.5 Morganella psychrotolerans dnaQ DNA polymerase III subunit epsilon

Distribution of the homologs in the orthogroup group_1864

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1864

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P03007 1.02e-140 397 76 0 242 1 dnaQ DNA polymerase III subunit epsilon Escherichia coli (strain K12)
P0A1G9 2.85e-139 394 76 0 242 3 dnaQ DNA polymerase III subunit epsilon Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1H0 2.85e-139 394 76 0 242 3 dnaQ DNA polymerase III subunit epsilon Salmonella typhi
Q9CPE0 8.79e-104 304 63 3 243 3 dnaQ DNA polymerase III subunit epsilon Pasteurella multocida (strain Pm70)
P43745 8.12e-100 294 59 4 251 3 dnaQ DNA polymerase III subunit epsilon Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AN3 4.75e-77 236 48 3 236 3 dnaQ DNA polymerase III subunit epsilon Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q08880 2.17e-73 226 52 1 229 3 dnaQ DNA polymerase III subunit epsilon Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57337 6.34e-72 223 48 3 235 3 dnaQ DNA polymerase III subunit epsilon Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q4UN31 1.57e-65 206 48 4 229 3 dnaQ DNA polymerase III subunit epsilon Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q68W16 1.03e-64 204 47 6 232 3 dnaQ DNA polymerase III subunit epsilon Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q92GL1 2.35e-64 203 48 4 229 3 dnaQ DNA polymerase III subunit epsilon Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9ZCJ9 4.33e-64 202 46 6 232 3 dnaQ DNA polymerase III subunit epsilon Rickettsia prowazekii (strain Madrid E)
Q1RJM1 4.73e-63 199 46 4 231 3 dnaQ DNA polymerase III subunit epsilon Rickettsia bellii (strain RML369-C)
O83649 3.72e-18 83 36 4 130 3 dnaQ DNA polymerase III subunit epsilon Treponema pallidum (strain Nichols)
Q9KA72 5.88e-18 86 32 5 176 3 polC DNA polymerase III PolC-type Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P13267 2.47e-17 84 28 6 201 1 polC DNA polymerase III PolC-type Bacillus subtilis (strain 168)
Q819Y5 1.99e-16 82 28 6 201 3 polC DNA polymerase III PolC-type Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q8RA32 1.16e-15 79 28 5 171 3 polC DNA polymerase III PolC-type Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
P54394 1.22e-15 79 30 5 171 3 dinG 3'-5' exonuclease DinG Bacillus subtilis (strain 168)
O68045 1.25e-15 79 30 6 179 3 dnaQ DNA polymerase III subunit epsilon-like protein Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q8EQU6 3.06e-15 78 30 6 162 3 polC DNA polymerase III PolC-type Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831)
A5IJJ8 4.35e-15 78 31 5 171 3 polC DNA polymerase III PolC-type Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)
Q8CPG6 2.2e-13 73 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q2YXK4 2.37e-13 72 25 5 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain bovine RF122 / ET3-1)
P63982 2.39e-13 72 26 6 201 1 polC DNA polymerase III PolC-type Staphylococcus aureus (strain N315)
P63981 2.39e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain Mu50 / ATCC 700699)
A7X1P4 2.39e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q6G9U9 2.41e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain MSSA476)
A6QGG4 2.41e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain Newman)
Q5HGG7 2.41e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain COL)
P68852 2.48e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain MW2)
Q2G1Z8 2.48e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FHH4 2.48e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain USA300)
Q5HPS7 2.48e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q6GHH1 2.7e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain MRSA252)
P0C1P9 2.85e-13 72 26 6 201 3 polC DNA polymerase III PolC-type Staphylococcus aureus
Q4L5W6 4.52e-13 72 24 6 210 3 polC DNA polymerase III PolC-type Staphylococcus haemolyticus (strain JCSC1435)
Q48R90 6.87e-12 68 29 6 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M28 (strain MGAS6180)
Q1JEV4 7.83e-12 68 29 6 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M2 (strain MGAS10270)
Q895K2 9.58e-12 68 28 6 169 3 polC DNA polymerase III PolC-type Clostridium tetani (strain Massachusetts / E88)
Q49X49 1.93e-11 67 25 6 201 3 polC DNA polymerase III PolC-type Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q03MX3 2.4e-11 67 30 7 146 3 polC DNA polymerase III PolC-type Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9)
Q9ZHF6 2.49e-11 67 29 5 171 1 polC DNA polymerase III PolC-type Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q5M6H0 2.56e-11 67 30 7 146 3 polC DNA polymerase III PolC-type Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
Q5M1Y0 2.56e-11 67 30 7 146 3 polC DNA polymerase III PolC-type Streptococcus thermophilus (strain CNRZ 1066)
Q8NZB5 2.86e-11 66 29 5 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M18 (strain MGAS8232)
P63984 5.29e-11 65 28 5 147 3 polC DNA polymerase III PolC-type Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)
P63983 5.29e-11 65 28 5 147 3 polC DNA polymerase III PolC-type Streptococcus agalactiae serotype III (strain NEM316)
P0C0B8 5.8e-11 65 29 6 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M1
Q1J4M0 5.96e-11 65 29 6 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M4 (strain MGAS10750)
A2RGI3 6.02e-11 65 29 6 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M5 (strain Manfredo)
Q1JJW3 6.13e-11 65 29 6 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M12 (strain MGAS9429)
Q1J9R4 6.13e-11 65 29 6 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M12 (strain MGAS2096)
P0DA77 6.31e-11 65 29 6 162 3 polC DNA polymerase III polC-type Streptococcus pyogenes serotype M3 (strain SSI-1)
P0DA76 6.31e-11 65 29 6 162 3 polC DNA polymerase III polC-type Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
Q5X9U8 6.61e-11 65 29 6 162 3 polC DNA polymerase III PolC-type Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
Q9PQB4 9.3e-11 65 29 6 177 3 polC DNA polymerase III PolC-type Ureaplasma parvum serovar 3 (strain ATCC 700970)
Q8DWE0 9.32e-11 65 27 6 162 3 polC DNA polymerase III PolC-type Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
Q8DRA5 1.8e-10 64 26 5 145 3 polC DNA polymerase III PolC-type Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q04MH6 1.8e-10 64 26 5 145 3 polC DNA polymerase III PolC-type Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Q97SQ2 1.89e-10 64 26 5 145 3 polC DNA polymerase III PolC-type Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P9WLJ1 2.26e-10 63 27 5 180 1 Rv2191 Putative bifunctional exonuclease/endonuclease protein Rv2191 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WLJ0 2.26e-10 63 27 5 180 4 MT2247 Putative bifunctional exonuclease/endonuclease protein MT2247 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q03QS9 3.11e-10 63 25 7 213 3 polC DNA polymerase III PolC-type Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947)
A3CQI2 4.73e-10 63 27 5 162 3 polC DNA polymerase III PolC-type Streptococcus sanguinis (strain SK36)
P0C0B7 6.42e-10 62 28 6 159 3 polC DNA polymerase III PolC-type Streptococcus pyogenes
Q8XJR3 6.91e-10 62 24 4 173 3 polC DNA polymerase III PolC-type Clostridium perfringens (strain 13 / Type A)
Q92C34 7.23e-10 62 28 7 169 3 polC DNA polymerase III PolC-type Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q9CDT7 7.34e-10 62 28 10 208 3 polC DNA polymerase III PolC-type Lactococcus lactis subsp. lactis (strain IL1403)
Q38W73 7.58e-10 62 30 7 162 3 polC DNA polymerase III PolC-type Latilactobacillus sakei subsp. sakei (strain 23K)
P0AEK0 1.84e-09 59 28 10 181 1 exoX Exodeoxyribonuclease 10 Escherichia coli (strain K12)
P0AEK1 1.84e-09 59 28 10 181 3 exoX Exodeoxyribonuclease 10 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Y7G1 1.89e-09 61 28 7 169 3 polC DNA polymerase III PolC-type Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q720A2 2.08e-09 61 28 7 169 3 polC DNA polymerase III PolC-type Listeria monocytogenes serotype 4b (strain F2365)
A0AIC1 2.24e-09 61 28 7 169 3 polC DNA polymerase III PolC-type Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8)
Q4L6F9 4.63e-09 60 28 6 173 3 dinG 3'-5' exonuclease DinG Staphylococcus haemolyticus (strain JCSC1435)
Q03FS8 5.84e-09 59 23 7 215 3 polC DNA polymerase III PolC-type Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w)
A4VXT1 8.79e-09 59 26 5 145 3 polC DNA polymerase III PolC-type Streptococcus suis (strain 05ZYH33)
A4W428 8.79e-09 59 26 5 145 3 polC DNA polymerase III PolC-type Streptococcus suis (strain 98HAH33)
Q88VK2 3.19e-08 57 27 7 162 3 polC DNA polymerase III PolC-type Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
Q038M0 3.73e-08 57 24 8 214 3 polC DNA polymerase III PolC-type Lacticaseibacillus paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / CIP 107868 / KCTC 3260 / NRRL B-441)
Q1WUF9 6.53e-08 56 26 7 171 3 polC DNA polymerase III PolC-type Ligilactobacillus salivarius (strain UCC118)
Q8CP71 1.4e-07 55 26 6 169 3 dinG 3'-5' exonuclease DinG Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HP88 1.4e-07 55 26 6 169 3 dinG 3'-5' exonuclease DinG Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P47729 1.7e-07 55 24 5 169 3 polC DNA polymerase III PolC-type Mycoplasmopsis pulmonis (strain UAB CTIP)
Q49XR1 5.1e-07 53 26 6 165 3 dinG 3'-5' exonuclease DinG Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q682U6 1.4e-06 52 28 11 192 1 DPD1 Exonuclease DPD1, chloroplastic/mitochondrial Arabidopsis thaliana
O67074 1.52e-06 50 24 6 175 3 dnaQ DNA polymerase III subunit epsilon Aquifex aeolicus (strain VF5)
A5VJD5 4.94e-06 50 26 7 149 3 polC DNA polymerase III PolC-type Limosilactobacillus reuteri (strain DSM 20016)
Q0V842 5.42e-06 50 30 6 136 2 NEN2 Protein NEN2 Arabidopsis thaliana
Q6GGV4 6.78e-05 47 26 4 134 1 dinG 3'-5' exonuclease DinG Staphylococcus aureus (strain MRSA252)
Q8NWP2 0.000116 46 26 4 134 3 dinG 3'-5' exonuclease DinG Staphylococcus aureus (strain MW2)
Q6G9A7 0.000116 46 26 4 134 3 dinG 3'-5' exonuclease DinG Staphylococcus aureus (strain MSSA476)
Q7A5K4 0.00012 46 26 4 134 1 dinG 3'-5' exonuclease DinG Staphylococcus aureus (strain N315)
Q99U34 0.00012 46 26 4 134 3 dinG 3'-5' exonuclease DinG Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFW8 0.00012 46 26 4 134 3 dinG 3'-5' exonuclease DinG Staphylococcus aureus (strain COL)
Q2FYH5 0.00012 46 26 4 134 2 dinG 3'-5' exonuclease DinG Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FGY5 0.00012 46 26 4 134 3 dinG 3'-5' exonuclease DinG Staphylococcus aureus (strain USA300)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01100
Feature type CDS
Gene dnaQ
Product DNA polymerase III subunit epsilon
Location 271246 - 272004 (strand: 1)
Length 759 (nucleotides) / 252 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1864
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00929 Exonuclease

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0847 Replication, recombination and repair (L) L DNA polymerase III, epsilon subunit or related 3'-5' exonuclease

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MSTPITRQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVHGISDEFLEDCPSFAEIADEFLAYIRGAELIIHNASFDIGFMDYEFQKLNRDIPLTETFCQITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQTALAFSMEGESNEEQKGDDIQRIVRPVRGLRVIKASAEELVAHEARLDLVVKKGGHCLWRPAPASNDETA

Flanking regions ( +/- flanking 50bp)

TTTTTAAGTAATACGAAAAATTAACCCTAAGTCTGACATAAAAACGGATTATGAGCACTCCAATCACACGACAAATTGTACTAGATACCGAAACAACCGGTATGAACAAACTGGGCGTTCACTATGAAGGCCATAATATCATTGAAATTGGTGCCGTTGAGGTTATCAATCGTCGCTTAACTGGGCGAAATTTCCATGTTTATATAAAACCAGAAAGATTGGTTGATCCTGAAGCTTTTGAAGTTCACGGGATCAGTGACGAATTTTTAGAAGATTGTCCTTCATTTGCAGAAATAGCGGATGAGTTTTTAGCGTATATTCGTGGTGCAGAATTAATTATCCATAACGCCTCGTTTGATATCGGCTTTATGGATTATGAGTTTCAGAAGCTTAACCGTGATATTCCTCTCACAGAAACTTTTTGCCAAATAACCGATAGCCTTGCTATGGCAAGGGAGTTATTTCCTGGCAAACGCAATAATCTAGATGCGTTATGTGACAGATATTTAATTGATAACTCCAAACGAACACTGCACGGCGCATTATTAGATGCCGAGATCCTCGCTGATGTTTACTTAGCTATGACCGGTGGGCAAACCGCATTAGCTTTTTCAATGGAAGGTGAATCGAACGAAGAGCAAAAAGGGGATGATATACAACGTATTGTACGACCAGTGCGTGGATTAAGAGTAATAAAAGCCTCTGCAGAAGAGTTAGTTGCGCACGAAGCTCGGTTAGATTTAGTGGTGAAAAAAGGAGGCCACTGTTTATGGCGTCCAGCTCCTGCTTCGAATGATGAAACTGCATAAAGGTAAAGTGATATAAATAGAGTGTTGAGATTAAAAACTATCCAAACGCA