Homologs in group_1970

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14770 FBDBKF_14770 66.5 Morganella morganii S1 sbcB exodeoxyribonuclease I
EHELCC_15575 EHELCC_15575 66.5 Morganella morganii S2 sbcB exodeoxyribonuclease I
NLDBIP_16105 NLDBIP_16105 66.5 Morganella morganii S4 sbcB exodeoxyribonuclease I
LHKJJB_15735 LHKJJB_15735 66.5 Morganella morganii S3 sbcB exodeoxyribonuclease I
HKOGLL_14855 HKOGLL_14855 66.5 Morganella morganii S5 sbcB exodeoxyribonuclease I
F4V73_RS07565 F4V73_RS07565 67.4 Morganella psychrotolerans sbcB exodeoxyribonuclease I

Distribution of the homologs in the orthogroup group_1970

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1970

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04995 0.0 676 66 1 474 1 sbcB Exodeoxyribonuclease I Escherichia coli (strain K12)
P45188 0.0 558 56 2 464 3 sbcB Exodeoxyribonuclease I Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K923 2.37e-146 430 43 2 463 3 sbcB Exodeoxyribonuclease I Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57620 5.8e-142 416 46 1 409 3 sbcB Exodeoxyribonuclease I Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89A43 1.19e-125 377 39 4 469 3 sbcB Exodeoxyribonuclease I Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04165
Feature type CDS
Gene sbcB
Product exodeoxyribonuclease I
Location 937301 - 938731 (strand: -1)
Length 1431 (nucleotides) / 476 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1970
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00929 Exonuclease
PF08411 Exonuclease C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2925 Replication, recombination and repair (L) L Exonuclease I (degrades ssDNA)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01141 exodeoxyribonuclease I [EC:3.1.11.1] Mismatch repair -

Protein Sequence

MSNSANTPTFYIHDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMITGITPQIALKHGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYSWQKGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDVYATIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVAPLAWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKCPIVAPKNTLRSQDADRIGLDIDNCLNNQAILLSNPEIRNKVVEIFAQQTPFTPADDVDAQLYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQQRWLAHRKEQLTPEKLTEYINTIQLLAEEHSDNEEKLKQLQELYLYAQEIAS

Flanking regions ( +/- flanking 50bp)

AACTCATTTAAAAATCAATTAATTAAGCAGATAAATTACGGTAGGAAACCTTGTCAAATTCAGCTAATACCCCCACTTTCTATATCCATGACTACGAGACCTTTGGTACGCATCCTGCGATGGATCGCCCTGCGCAATTTGCCGGTGTCAGAACAGATATGGATTTTAATATCATTGAAGATCCTCTGGTCATTTATTGCAAACCGAATGATGATTACTTACCTCAGCCAGAAGCCGTCATGATAACGGGGATCACACCACAAATAGCACTAAAGCATGGTGTATCAGAAGCTGAATTTACTCGCCAAATTCATCAAGCCTTTAGCCAGCCTAACAGTTGTATTATGGGTTATAACAATTTACGCTTTGATGATGAAGTCACCAGAAATATCTTATACCGTAATTTTTATGATCCCTATGCCTATAGTTGGCAAAAAGGAAATTCACGTTGGGATTTACTTGATGTTTTACGTGCATGTTATGCATTGCGTCCTGAGGGAATTAATTGGCCTGAGAATGATGATGGCTTTCCGAGTTTTCGCCTTGAGCTATTAACTAAAGCAAATGGGATCTCCCACGAAAATGCGCATGATGCCATGTCAGACGTTTATGCAACTATTGCGATGGCAAAAAAACTCAAACAAGCGCAACCTCGTATGTTTGATTATTTCTTTAATTTACGTGATAAACGTAAAGTACAAGCACTGATAGATATCCCAACCATGACGCCGCTTGTGCATGTTTCTGGTATGTTTGGTGCAGCGCGTTCTAATTTAAGCCTTGTAGCTCCTTTAGCTTGGCATCCAGATAATCGTAATGCGGTGATTGTTTGTGATTTAGCTGCGGATATTTCCCCTTTATTAACCCTCACTTCAGAGCAATTGCGTGAGCGCTTATATACTCCTCGCAGTGAGTTATCTGCCGATGAGCCACCAGTTCCGATAAAATTACTGCATATTAATAAATGCCCTATCGTTGCACCTAAAAATACCCTCAGATCTCAAGATGCCGATAGAATTGGATTAGATATTGATAATTGTTTAAATAACCAAGCAATATTGCTGTCTAATCCTGAGATCCGCAATAAAGTCGTCGAGATTTTTGCTCAGCAAACACCATTTACCCCTGCAGATGATGTTGATGCTCAATTATACAATGGCTTTTTTAGCGATAATGATCGTAGCGCGATGGAAATTATTCGCTCAACACAGCCACAAAACTTACCAGCACTTAATTTAACTTTTGAAGATCCACGTATGGAGCCGCTGTTTTTCCGTTACCGTGCGAGAAACTTCCCAGCCACATTAACTTATGATGAACAACAACGTTGGTTAGCGCATAGAAAAGAGCAATTAACGCCAGAAAAGCTGACTGAATATATCAATACCATTCAGCTGTTAGCAGAAGAACATAGCGATAACGAAGAAAAGCTAAAACAACTGCAAGAGCTATATTTATATGCTCAAGAAATTGCGAGTTAATAACATCAGATAAGCAATTAAATTACGCAAAAGGCAGGTTTCCCTGCCTT