Homologs in group_274

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05700 FBDBKF_05700 100.0 Morganella morganii S1 rnt ribonuclease T
EHELCC_11890 EHELCC_11890 100.0 Morganella morganii S2 rnt ribonuclease T
NLDBIP_12230 NLDBIP_12230 100.0 Morganella morganii S4 rnt ribonuclease T
HKOGLL_10705 HKOGLL_10705 100.0 Morganella morganii S5 rnt ribonuclease T
F4V73_RS03605 F4V73_RS03605 91.5 Morganella psychrotolerans rnt ribonuclease T
F4V73_RS17870 F4V73_RS17870 31.9 Morganella psychrotolerans - 3'-5' exonuclease
PMI_RS06730 PMI_RS06730 81.1 Proteus mirabilis HI4320 rnt ribonuclease T

Distribution of the homologs in the orthogroup group_274

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_274

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A6TA01 1.92e-120 343 75 0 208 3 rnt Ribonuclease T Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q7N3W0 4.39e-120 342 75 0 208 3 rnt Ribonuclease T Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q6D5W0 6.36e-117 335 70 0 215 3 rnt Ribonuclease T Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A7FHK6 8.88e-117 334 72 1 214 3 rnt Ribonuclease T Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q8ZE08 1.06e-116 333 72 1 214 3 rnt Ribonuclease T Yersinia pestis
Q66A36 3.03e-116 332 71 1 214 3 rnt Ribonuclease T Yersinia pseudotuberculosis serotype I (strain IP32953)
A7MFC6 3.26e-116 333 73 0 208 3 rnt Ribonuclease T Cronobacter sakazakii (strain ATCC BAA-894)
A1JP36 3.57e-116 332 71 1 214 3 rnt Ribonuclease T Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P66684 1.13e-115 331 72 0 208 3 rnt Ribonuclease T Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P66685 1.13e-115 331 72 0 208 3 rnt Ribonuclease T Salmonella typhi
Q5PH07 1.13e-115 331 72 0 208 3 rnt Ribonuclease T Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57PK2 1.18e-115 331 72 0 208 3 rnt Ribonuclease T Salmonella choleraesuis (strain SC-B67)
A8AH33 6.59e-115 329 71 0 208 3 rnt Ribonuclease T Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q3Z208 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Shigella sonnei (strain Ss046)
P66683 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Shigella flexneri
Q32FB8 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Shigella dysenteriae serotype 1 (strain Sd197)
Q1RBE3 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Escherichia coli (strain UTI89 / UPEC)
P66681 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0THH6 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1ABJ5 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Escherichia coli O1:K1 / APEC
A8A0J6 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Escherichia coli O9:H4 (strain HS)
P66682 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Escherichia coli O157:H7
A7ZMB5 7.77e-115 329 71 1 214 3 rnt Ribonuclease T Escherichia coli O139:H28 (strain E24377A / ETEC)
P30014 1.03e-114 328 72 0 211 1 rnt Ribonuclease T Escherichia coli (strain K12)
Q321A7 3.52e-114 327 71 1 214 3 rnt Ribonuclease T Shigella boydii serotype 4 (strain Sb227)
A4W9U3 6.21e-114 327 72 0 208 3 rnt Ribonuclease T Enterobacter sp. (strain 638)
Q0T4C2 5e-113 324 71 1 214 3 rnt Ribonuclease T Shigella flexneri serotype 5b (strain 8401)
Q6LP25 2.8e-103 300 67 1 209 3 rnt Ribonuclease T Photobacterium profundum (strain SS9)
Q1LU01 9.97e-102 296 63 0 214 3 rnt Ribonuclease T Baumannia cicadellinicola subsp. Homalodisca coagulata
A0KY98 5.3e-101 294 65 0 208 3 rnt Ribonuclease T Shewanella sp. (strain ANA-3)
Q0HTX3 2.35e-100 293 65 0 208 3 rnt Ribonuclease T Shewanella sp. (strain MR-7)
Q0HHM1 2.35e-100 293 65 0 208 3 rnt Ribonuclease T Shewanella sp. (strain MR-4)
A3D3D5 4.48e-100 292 63 0 215 3 rnt Ribonuclease T Shewanella baltica (strain OS155 / ATCC BAA-1091)
A6WM39 5.34e-100 292 63 0 215 3 rnt Ribonuclease T Shewanella baltica (strain OS185)
Q9KT97 3.15e-99 290 66 1 209 3 rnt Ribonuclease T Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8EDJ2 5.2e-99 289 63 0 215 3 rnt Ribonuclease T Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
A5UAG1 8.13e-99 289 61 1 211 3 rnt Ribonuclease T Haemophilus influenzae (strain PittEE)
Q4QNL5 9.68e-99 289 61 1 214 3 rnt Ribonuclease T Haemophilus influenzae (strain 86-028NP)
P44639 1.79e-98 288 61 1 214 3 rnt Ribonuclease T Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UGD7 3.09e-98 288 61 1 214 3 rnt Ribonuclease T Haemophilus influenzae (strain PittGG)
Q7MM91 1.74e-95 280 63 1 208 3 rnt Ribonuclease T Vibrio vulnificus (strain YJ016)
Q8D882 9.49e-95 278 63 1 208 3 rnt Ribonuclease T Vibrio vulnificus (strain CMCP6)
Q12PE3 1.3e-94 278 65 0 203 3 rnt Ribonuclease T Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
A1RKQ1 1.78e-94 278 64 0 215 3 rnt Ribonuclease T Shewanella sp. (strain W3-18-1)
Q0I251 2.26e-94 277 60 0 206 3 rnt Ribonuclease T Histophilus somni (strain 129Pt)
A4Y5U2 2.53e-94 277 65 0 208 3 rnt Ribonuclease T Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
P46232 4.04e-93 274 63 1 201 3 rnt Ribonuclease T Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A7MUL2 1.12e-92 273 64 1 201 3 rnt Ribonuclease T Vibrio campbellii (strain ATCC BAA-1116)
Q084K7 1.37e-92 273 62 0 211 3 rnt Ribonuclease T Shewanella frigidimarina (strain NCIMB 400)
P57896 2.24e-92 272 60 0 207 3 rnt Ribonuclease T Pasteurella multocida (strain Pm70)
A3MYQ4 1.23e-91 270 59 0 208 3 rnt Ribonuclease T Actinobacillus pleuropneumoniae serotype 5b (strain L20)
Q492U0 1.71e-91 270 60 1 209 3 rnt Ribonuclease T Blochmanniella pennsylvanica (strain BPEN)
P57285 4.11e-91 269 58 0 208 3 rnt Ribonuclease T Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q7VR55 1.63e-90 268 62 1 209 3 rnt Ribonuclease T Blochmanniella floridana
A1U3L2 4.64e-89 264 58 0 207 3 rnt Ribonuclease T Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8)
Q057V1 6.88e-89 263 59 0 200 3 rnt Ribonuclease T Buchnera aphidicola subsp. Cinara cedri (strain Cc)
Q2SCE2 1.19e-88 263 56 1 209 3 rnt Ribonuclease T Hahella chejuensis (strain KCTC 2396)
Q7VND8 1.37e-87 260 58 0 203 3 rnt Ribonuclease T Haemophilus ducreyi (strain 35000HP / ATCC 700724)
A6V1R8 1.53e-86 258 59 0 198 3 rnt Ribonuclease T Pseudomonas aeruginosa (strain PA7)
P59497 4.4e-86 256 54 0 209 3 rnt Ribonuclease T Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9HY82 5.99e-86 256 59 0 198 1 rnt Ribonuclease T Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02QZ9 5.99e-86 256 59 0 198 3 rnt Ribonuclease T Pseudomonas aeruginosa (strain UCBPP-PA14)
Q8K9V5 8.48e-86 256 56 0 208 3 rnt Ribonuclease T Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q4ZPJ7 8.99e-86 256 59 0 198 3 rnt Ribonuclease T Pseudomonas syringae pv. syringae (strain B728a)
Q48F11 1.04e-85 256 59 0 198 3 rnt Ribonuclease T Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
Q8D2L9 2.31e-85 254 55 1 209 3 rnt Ribonuclease T Wigglesworthia glossinidia brevipalpis
Q3K7J7 3.6e-85 254 60 0 198 3 rnt Ribonuclease T Pseudomonas fluorescens (strain Pf0-1)
Q1QVM9 9.41e-85 253 58 1 212 3 rnt Ribonuclease T Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
Q87XM0 1.51e-84 253 59 0 198 3 rnt Ribonuclease T Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
O54364 3.76e-84 251 56 1 212 3 rnt Ribonuclease T Mannheimia haemolytica
Q4K746 6.24e-84 251 59 0 198 3 rnt Ribonuclease T Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q88NW8 7.28e-84 250 58 0 198 3 rnt Ribonuclease T Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
A5VZH7 1.16e-83 250 58 0 198 3 rnt Ribonuclease T Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
Q1IE06 2.03e-83 250 58 0 198 3 rnt Ribonuclease T Pseudomonas entomophila (strain L48)
Q9PBJ8 2.21e-60 191 48 0 196 3 rnt Ribonuclease T Xylella fastidiosa (strain 9a5c)
Q87C86 3.49e-60 190 48 0 196 3 rnt Ribonuclease T Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q8PAG3 1.7e-59 189 47 0 192 3 rnt Ribonuclease T Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q4UT60 1.7e-59 189 47 0 192 3 rnt Ribonuclease T Xanthomonas campestris pv. campestris (strain 8004)
Q3BV71 3.1e-59 188 47 0 192 3 rnt Ribonuclease T Xanthomonas euvesicatoria pv. vesicatoria (strain 85-10)
Q8PM62 1.71e-58 186 47 0 192 3 rnt Ribonuclease T Xanthomonas axonopodis pv. citri (strain 306)
Q9Z5X0 1.35e-48 157 61 0 112 3 rnt Ribonuclease T (Fragment) Azotobacter vinelandii
Q4L5W6 1.51e-09 60 28 6 193 3 polC DNA polymerase III PolC-type Staphylococcus haemolyticus (strain JCSC1435)
Q8CPG6 2.24e-09 60 28 6 193 3 polC DNA polymerase III PolC-type Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HPS7 2.26e-09 60 28 6 193 3 polC DNA polymerase III PolC-type Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P0C1P9 9.15e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus
P63982 9.5e-09 58 27 6 193 1 polC DNA polymerase III PolC-type Staphylococcus aureus (strain N315)
P63981 9.5e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain Mu50 / ATCC 700699)
A7X1P4 9.5e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain Mu3 / ATCC 700698)
Q6GHH1 9.68e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain MRSA252)
Q6G9U9 9.77e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain MSSA476)
A6QGG4 9.77e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain Newman)
Q5HGG7 9.77e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain COL)
P68852 9.95e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain MW2)
Q2G1Z8 9.95e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FHH4 9.95e-09 58 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain USA300)
Q2YXK4 4.75e-08 56 27 6 193 3 polC DNA polymerase III PolC-type Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q819Y5 1.27e-06 52 27 6 180 3 polC DNA polymerase III PolC-type Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q1WUF9 7.57e-06 49 26 9 197 3 polC DNA polymerase III PolC-type Ligilactobacillus salivarius (strain UCC118)
Q92C34 2.07e-05 48 32 5 121 3 polC DNA polymerase III PolC-type Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q49X49 2.52e-05 48 24 5 186 3 polC DNA polymerase III PolC-type Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
A0AIC1 3.92e-05 47 25 7 191 3 polC DNA polymerase III PolC-type Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / CCUG 15529 / CIP 8149 / NCTC 11857 / SLCC 5334 / V8)
Q720A2 8.27e-05 46 31 5 121 3 polC DNA polymerase III PolC-type Listeria monocytogenes serotype 4b (strain F2365)
Q8Y7G1 8.58e-05 46 31 5 121 3 polC DNA polymerase III PolC-type Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q03QS9 0.000136 45 28 4 133 3 polC DNA polymerase III PolC-type Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947)
P47277 0.000166 45 26 10 207 3 polC DNA polymerase III PolC-type Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q895K2 0.000193 45 27 5 146 3 polC DNA polymerase III PolC-type Clostridium tetani (strain Massachusetts / E88)
Q8RA32 0.000304 45 26 8 196 3 polC DNA polymerase III PolC-type Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q4L6F9 0.000363 44 24 6 186 3 dinG 3'-5' exonuclease DinG Staphylococcus haemolyticus (strain JCSC1435)
Q9CDT7 0.000437 44 27 8 204 3 polC DNA polymerase III PolC-type Lactococcus lactis subsp. lactis (strain IL1403)
Q9KA72 0.000519 44 29 10 189 3 polC DNA polymerase III PolC-type Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_12090
Feature type CDS
Gene rnt
Product ribonuclease T
Location 34697 - 35344 (strand: -1)
Length 648 (nucleotides) / 215 (amino acids)

Contig

Accession ZDB_369
Length 181491 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_274
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00929 Exonuclease

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0847 Replication, recombination and repair (L) L DNA polymerase III, epsilon subunit or related 3'-5' exonuclease

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03683 ribonuclease T [EC:3.1.13.-] - -

Protein Sequence

MSENQNHNTLSARFRGYYPVVIDVETGGFNARTDGMLEIAAITVKMDNNGWLMPDQRLEFNVQPFEGANLDPAALAFTGINPADPERNAVTEYEALHAIFKMVRKGMKDADCKRAIIVAHNANFDHSFVMAAAERCGLKRNPFHPFATFDTAALSGLSLGQTILAKACITAGIPFDSKKAHGAAYDTDRTSLLFCDIVNRWKKLGGWPPAADSNQ

Flanking regions ( +/- flanking 50bp)

CGGCAAGCCGCGCTAGAATAGTGCGTTTTGTTTGTTTAATTAAGAGTCCCATGTCTGAAAATCAAAATCACAATACTCTGAGCGCACGTTTCCGCGGCTATTATCCTGTCGTTATTGATGTTGAAACCGGCGGTTTTAATGCCAGAACGGACGGGATGCTGGAAATTGCCGCCATTACCGTCAAAATGGATAACAACGGCTGGCTGATGCCGGATCAGCGGCTTGAATTTAATGTGCAGCCTTTTGAGGGTGCAAACCTTGATCCCGCCGCTCTGGCATTTACCGGTATTAATCCGGCCGACCCGGAGCGTAATGCGGTAACAGAATATGAAGCGCTGCATGCCATTTTCAAAATGGTCCGCAAAGGCATGAAAGATGCGGATTGCAAGCGGGCGATTATCGTGGCGCACAATGCAAATTTTGATCACAGCTTTGTGATGGCAGCGGCAGAACGCTGCGGACTGAAACGCAATCCGTTTCATCCGTTTGCCACCTTTGATACCGCCGCATTAAGCGGACTGTCTCTGGGCCAGACCATTCTGGCAAAAGCCTGTATCACCGCAGGTATCCCGTTTGACAGCAAAAAAGCCCACGGTGCGGCTTATGATACCGACCGTACCTCCCTGCTCTTTTGTGACATCGTCAACCGCTGGAAGAAACTGGGCGGCTGGCCGCCGGCGGCAGACAGTAATCAGTGAGAAAACGCCACCGTCAGGGTGGCGTTTTTCGCTATATTGTCATTAATGCG