Homologs in group_274

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05700 FBDBKF_05700 31.9 Morganella morganii S1 rnt ribonuclease T
EHELCC_11890 EHELCC_11890 31.9 Morganella morganii S2 rnt ribonuclease T
NLDBIP_12230 NLDBIP_12230 31.9 Morganella morganii S4 rnt ribonuclease T
LHKJJB_12090 LHKJJB_12090 31.9 Morganella morganii S3 rnt ribonuclease T
HKOGLL_10705 HKOGLL_10705 31.9 Morganella morganii S5 rnt ribonuclease T
F4V73_RS03605 F4V73_RS03605 32.8 Morganella psychrotolerans rnt ribonuclease T
PMI_RS06730 PMI_RS06730 33.0 Proteus mirabilis HI4320 rnt ribonuclease T

Distribution of the homologs in the orthogroup group_274

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_274

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9ZCJ9 1e-11 65 29 7 186 3 dnaQ DNA polymerase III subunit epsilon Rickettsia prowazekii (strain Madrid E)
Q68W16 1.06e-10 62 30 6 167 3 dnaQ DNA polymerase III subunit epsilon Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q4UN31 2.69e-10 61 28 7 185 3 dnaQ DNA polymerase III subunit epsilon Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q92GL1 4.09e-10 60 29 6 167 3 dnaQ DNA polymerase III subunit epsilon Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q1RJM1 9.71e-10 59 29 6 167 3 dnaQ DNA polymerase III subunit epsilon Rickettsia bellii (strain RML369-C)
Q9CPE0 1.79e-08 56 27 6 173 3 dnaQ DNA polymerase III subunit epsilon Pasteurella multocida (strain Pm70)
Q9R1A9 3.63e-06 49 29 8 201 1 Trex2 Three prime repair exonuclease 2 Mus musculus
P43745 8.42e-06 48 26 6 169 3 dnaQ DNA polymerase III subunit epsilon Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P47277 8.43e-06 49 27 8 183 3 polC DNA polymerase III PolC-type Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q9BQ50 1.76e-05 47 30 10 199 1 TREX2 Three prime repair exonuclease 2 Homo sapiens
O83649 3.94e-05 46 29 8 171 3 dnaQ DNA polymerase III subunit epsilon Treponema pallidum (strain Nichols)
P75080 9.34e-05 46 29 8 178 1 polC DNA polymerase III PolC-type Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P0A1G9 0.000353 43 26 8 182 3 dnaQ DNA polymerase III subunit epsilon Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1H0 0.000353 43 26 8 182 3 dnaQ DNA polymerase III subunit epsilon Salmonella typhi
P59497 0.000603 42 27 8 193 3 rnt Ribonuclease T Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17870
Feature type CDS
Gene -
Product 3'-5' exonuclease
Location 17511 - 18122 (strand: -1)
Length 612 (nucleotides) / 203 (amino acids)

Contig

Accession term accessions NZ_VXKB01000008 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 103951 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_274
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00929 Exonuclease

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0847 Replication, recombination and repair (L) L DNA polymerase III, epsilon subunit or related 3'-5' exonuclease

Protein Sequence

MMPAKTKIAVGIDLETTGLEYADGHRIFEIAICARDLLTGAAVKDLVLRFNPRREISAKAQEITGVKLADLVAEPLFETKAKSIATILNNASVIVAHNGLGFDKPFLDHELGLCGERLRSNLIWMDTMLHGLWATQDGKRPTLRELAFSLGYEYEEEKAHGALYDTQLMMDCFFTARNKYGLFKIPDEEILLEDKLSEMSGMF

Flanking regions ( +/- flanking 50bp)

GCAGCGGTAACGAAAGCCATGACGTTCAGCAAAAACGGAGCTGTGCGGTTATGATGCCGGCAAAGACAAAAATTGCTGTCGGCATTGACCTTGAAACTACCGGTCTGGAATATGCTGACGGACACCGTATTTTTGAGATTGCTATCTGCGCCCGTGATCTGCTTACAGGGGCGGCTGTTAAGGATCTCGTTTTACGGTTCAATCCACGGCGGGAAATATCAGCAAAAGCGCAGGAAATTACCGGGGTTAAGCTGGCTGATCTGGTCGCAGAGCCGCTGTTTGAAACCAAAGCGAAGTCGATAGCAACAATCCTGAATAACGCCTCAGTCATTGTCGCTCACAACGGGTTAGGGTTCGACAAACCGTTTCTGGATCATGAGCTGGGTCTGTGCGGTGAGCGTCTGCGTTCAAATCTGATCTGGATGGATACCATGCTTCACGGGTTATGGGCGACACAGGACGGGAAACGCCCTACCCTGCGTGAACTGGCATTCTCGCTGGGTTATGAGTATGAAGAGGAAAAAGCCCACGGGGCGCTGTACGATACTCAGCTTATGATGGATTGCTTTTTCACAGCCCGGAACAAATACGGTCTGTTTAAGATACCGGATGAGGAAATTCTTTTGGAAGATAAACTGTCTGAAATGAGCGGTATGTTTTAGTTATACGGATAGCCGTAAATATTTATGGCTATCCGTTAAATTCATCAGTA