Homologs in group_1970

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_15575 EHELCC_15575 100.0 Morganella morganii S2 sbcB exodeoxyribonuclease I
NLDBIP_16105 NLDBIP_16105 100.0 Morganella morganii S4 sbcB exodeoxyribonuclease I
LHKJJB_15735 LHKJJB_15735 100.0 Morganella morganii S3 sbcB exodeoxyribonuclease I
HKOGLL_14855 HKOGLL_14855 100.0 Morganella morganii S5 sbcB exodeoxyribonuclease I
F4V73_RS07565 F4V73_RS07565 92.4 Morganella psychrotolerans sbcB exodeoxyribonuclease I
PMI_RS04165 PMI_RS04165 66.5 Proteus mirabilis HI4320 sbcB exodeoxyribonuclease I

Distribution of the homologs in the orthogroup group_1970

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1970

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P04995 0.0 667 66 1 468 1 sbcB Exodeoxyribonuclease I Escherichia coli (strain K12)
P45188 0.0 526 52 2 467 3 sbcB Exodeoxyribonuclease I Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K923 1.92e-148 435 43 1 463 3 sbcB Exodeoxyribonuclease I Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57620 8.3e-140 410 46 2 410 3 sbcB Exodeoxyribonuclease I Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89A43 6.82e-126 377 38 4 473 3 sbcB Exodeoxyribonuclease I Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_14770
Feature type CDS
Gene sbcB
Product exodeoxyribonuclease I
Location 51745 - 53163 (strand: 1)
Length 1419 (nucleotides) / 472 (amino acids)

Contig

Accession contig_19
Length 86773 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1970
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00929 Exonuclease
PF08411 Exonuclease C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2925 Replication, recombination and repair (L) L Exonuclease I (degrades ssDNA)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01141 exodeoxyribonuclease I [EC:3.1.11.1] Mismatch repair -

Protein Sequence

MSSAQFFFHDYETFGQDPAGDRPAQFAGVRTDSEFNIIADPVIAYCAPADDYLPQPAAVMITGITPQEALQKGVNEAQFAKLIHDTFTQPDTCILGYNSIRFDDEVTRNIFYRNFYDPYAYSWMNRNSRWDLIDITRACYALRPDGTNWPENDEGLPSFKLEHLTAANGIAHENAHDAMADVYATIAMAKQLRGAQPRLFDYFFTLRDKRKLAALIDIPSMKPLVHISGMFGAVRANTSLVAPLAWHPDNRNAVIMCDLAGDLTPLLTLDADTLREHLYTRRDELPEDASPVPLKLVHINKCPILAPENTLRPQDAQRIGLDKDLCARNAELLHQHPEIREKVVAVFAQPREFQPQNDVDRMIYQGFFSDSDKAAMTIIRETDPKNLPALALSYQDARLPELLFRYRARNFPGTLDEHEQQRWLAHRREVFNQDNLTRYFEQIGEMMQEYQHDVNKTELLKKLVQYAQHLAQ

Flanking regions ( +/- flanking 50bp)

CCCGATTTGCTACCCTGTAGCCCATCATTTATCAGAAAACGGGCCATACGGTGTCTTCAGCACAATTTTTCTTTCACGATTACGAAACCTTCGGGCAGGATCCTGCCGGTGACCGCCCGGCGCAGTTTGCCGGTGTCCGCACAGACAGTGAATTCAATATTATCGCCGACCCGGTGATCGCCTACTGCGCCCCGGCGGATGATTATCTGCCGCAGCCCGCTGCTGTGATGATAACCGGCATCACGCCGCAGGAAGCCCTGCAGAAAGGGGTTAATGAAGCGCAGTTTGCTAAGCTGATTCATGACACCTTTACACAGCCGGACACCTGTATTCTCGGCTATAACAGCATTCGTTTTGATGATGAAGTCACCCGTAATATTTTCTACCGGAATTTTTACGACCCGTATGCCTACAGCTGGATGAACCGCAATTCCCGCTGGGATCTGATCGATATCACCCGCGCCTGCTATGCGCTGCGTCCGGACGGCACAAACTGGCCGGAGAATGACGAAGGGCTGCCGAGCTTTAAGCTGGAACACCTGACTGCCGCCAACGGTATCGCTCATGAAAATGCCCACGATGCGATGGCGGATGTATATGCTACCATTGCCATGGCAAAACAGCTGCGCGGTGCACAGCCGCGTCTGTTCGATTATTTCTTCACTCTGCGCGATAAGCGCAAACTCGCGGCACTGATTGATATTCCGTCCATGAAACCGCTGGTGCATATCTCCGGAATGTTCGGGGCTGTCCGCGCCAATACCAGCCTGGTAGCCCCGCTGGCATGGCATCCGGATAACCGCAATGCCGTGATTATGTGTGACCTCGCCGGTGACCTGACCCCGCTGCTGACGCTGGATGCGGATACCCTGCGCGAACACCTGTACACCCGCCGTGATGAACTGCCGGAAGACGCGTCCCCGGTACCGCTCAAACTGGTGCATATCAATAAGTGTCCGATCCTGGCACCGGAAAATACCCTGCGCCCGCAGGATGCACAGCGTATCGGGCTGGATAAAGACCTGTGTGCCCGTAATGCAGAACTGTTGCATCAGCATCCGGAGATCCGCGAGAAAGTCGTGGCGGTGTTCGCACAACCGCGTGAGTTTCAGCCGCAGAATGATGTGGACCGCATGATTTATCAGGGCTTTTTCAGTGATTCGGATAAAGCGGCCATGACGATTATCCGCGAGACGGATCCGAAAAACCTGCCGGCACTGGCGCTGAGCTATCAGGATGCCCGTCTGCCGGAGTTACTGTTCCGCTACCGCGCCCGGAATTTCCCCGGCACACTGGATGAGCATGAGCAGCAGCGCTGGCTTGCCCATCGCCGTGAGGTCTTTAATCAGGATAATTTAACGCGTTATTTTGAGCAGATTGGTGAAATGATGCAGGAATATCAGCATGATGTGAACAAGACAGAATTACTGAAGAAGCTGGTGCAGTACGCGCAGCACCTGGCGCAGTAATCAGAACAGACTGCCGGGAGGGAGACTCCCGGCAGTGAAATCATCCCGCT