PF00877


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00877, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 41 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00877
Description NlpC/P60 family

Occurence in the database

PF00877 is associated with 41 different proteins (see tab "Protein list" and "Profile")
The 41 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_27 FBDBKF_00045 8002 8715 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S1
1 group_27 FBDBKF_11500 96014 96727 1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S1
2 group_27 FBDBKF_13045 3427 4155 -1 Phage tail protein Morganella morganii S1
3 group_1797 FBDBKF_13340 45258 45743 -1 nlpC Cell wall-associated hydrolase, NlpC_P60 family Morganella morganii S1
4 group_1982 FBDBKF_14870 74753 75307 1 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase Morganella morganii S1
5 group_131 FBDBKF_18570 4180 4890 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S1
6 group_131 FBDBKF_19340 2492 3199 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S1
7 group_27 EHELCC_01500 300153 300866 1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S2
8 group_1797 EHELCC_08755 229448 229933 1 nlpC Cell wall-associated hydrolase, NlpC_P60 family Morganella morganii S2
9 group_131 EHELCC_15145 4180 4890 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S2
10 group_1982 EHELCC_15675 104829 105383 1 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase Morganella morganii S2
11 group_27 EHELCC_17715 3988 4701 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S2
12 group_131 EHELCC_19320 10204 10911 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S2
13 group_27 NLDBIP_01960 379270 379983 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S4
14 group_27 NLDBIP_05045 3814 4527 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S4
15 group_1797 NLDBIP_09080 229448 229933 1 nlpC Cell wall-associated hydrolase, NlpC_P60 family Morganella morganii S4
16 group_131 NLDBIP_15675 4180 4890 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S4
17 group_1982 NLDBIP_16205 104829 105383 1 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase Morganella morganii S4
18 group_131 NLDBIP_19450 10204 10911 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S4
19 group_27 NLDBIP_19910 409 1137 -1 Phage tail protein Morganella morganii S4
20 group_27 LHKJJB_00075 12702 13415 1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S3
21 group_1797 LHKJJB_05185 27226 27711 -1 nlpC Cell wall-associated hydrolase, NlpC_P60 family Morganella morganii S3
22 group_1982 LHKJJB_15635 11303 11857 -1 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase Morganella morganii S3
23 group_131 LHKJJB_16165 111796 112506 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S3
24 group_27 LHKJJB_19160 3475 4188 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S3
25 group_131 LHKJJB_19355 2492 3199 -1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S3
26 group_27 LHKJJB_19870 409 1137 -1 Phage tail protein Morganella morganii S3
27 group_27 HKOGLL_00115 18213 18926 1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S5
28 group_1797 HKOGLL_05730 214039 214524 1 nlpC Cell wall-associated hydrolase, NlpC_P60 family Morganella morganii S5
29 group_27 HKOGLL_06025 255627 256355 1 Phage tail protein Morganella morganii S5
30 group_1982 HKOGLL_14755 10515 11069 -1 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase Morganella morganii S5
31 group_131 HKOGLL_15285 111008 111718 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S5
32 group_27 HKOGLL_15305 4778 5491 -1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif Morganella morganii S5
33 group_131 HKOGLL_19255 10204 10911 1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif Morganella morganii S5
34 group_27 F4V73_RS02235 470701 471426 1 NlpC/P60 family protein Morganella psychrotolerans
35 group_1797 F4V73_RS03420 730284 730769 1 NlpC/P60 family protein Morganella psychrotolerans
36 group_1982 F4V73_RS07670 1604317 1604871 1 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase Morganella psychrotolerans
37 group_27 F4V73_RS18170 77476 78249 -1 C40 family peptidase Morganella psychrotolerans
38 group_131 PMI_RS02600 567122 567832 1 C40 family peptidase Proteus mirabilis HI4320
39 group_1982 PMI_RS04080 913552 914166 -1 mepS bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase Proteus mirabilis HI4320
40 group_1797 PMI_RS05105 1115210 1115701 1 NlpC/P60 family protein Proteus mirabilis HI4320