Homologs in group_2

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26 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00045 FBDBKF_00045 34.5 Morganella morganii S1 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
FBDBKF_11500 FBDBKF_11500 35.0 Morganella morganii S1 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
FBDBKF_13045 FBDBKF_13045 37.0 Morganella morganii S1 - Phage tail protein
FBDBKF_18570 FBDBKF_18570 95.7 Morganella morganii S1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
FBDBKF_19340 FBDBKF_19340 100.0 Morganella morganii S1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
EHELCC_01500 EHELCC_01500 34.5 Morganella morganii S2 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
EHELCC_15145 EHELCC_15145 95.7 Morganella morganii S2 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
EHELCC_17715 EHELCC_17715 35.0 Morganella morganii S2 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
EHELCC_19320 EHELCC_19320 100.0 Morganella morganii S2 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
NLDBIP_01960 NLDBIP_01960 34.5 Morganella morganii S4 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
NLDBIP_05045 NLDBIP_05045 35.0 Morganella morganii S4 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
NLDBIP_15675 NLDBIP_15675 95.7 Morganella morganii S4 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
NLDBIP_19450 NLDBIP_19450 100.0 Morganella morganii S4 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
NLDBIP_19910 NLDBIP_19910 36.1 Morganella morganii S4 - Phage tail protein
LHKJJB_00075 LHKJJB_00075 34.5 Morganella morganii S3 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
LHKJJB_16165 LHKJJB_16165 95.7 Morganella morganii S3 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
LHKJJB_19160 LHKJJB_19160 35.0 Morganella morganii S3 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
LHKJJB_19355 LHKJJB_19355 100.0 Morganella morganii S3 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
LHKJJB_19870 LHKJJB_19870 36.1 Morganella morganii S3 - Phage tail protein
HKOGLL_00115 HKOGLL_00115 34.5 Morganella morganii S5 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
HKOGLL_06025 HKOGLL_06025 37.0 Morganella morganii S5 - Phage tail protein
HKOGLL_15285 HKOGLL_15285 95.7 Morganella morganii S5 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
HKOGLL_15305 HKOGLL_15305 35.0 Morganella morganii S5 - Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif
F4V73_RS02235 F4V73_RS02235 33.6 Morganella psychrotolerans - NlpC/P60 family protein
F4V73_RS18170 F4V73_RS18170 32.6 Morganella psychrotolerans - C40 family peptidase
PMI_RS02600 PMI_RS02600 59.5 Proteus mirabilis HI4320 - C40 family peptidase

Distribution of the homologs in the orthogroup group_2

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O64333 5.4e-123 352 73 2 233 3 gene Tail tip assembly protein K Escherichia phage N15 19
P03729 7.46e-26 102 36 4 183 3 K Tail tip assembly protein K Escherichia phage lambda
D4GTS4 0.000452 42 31 5 115 1 HVO_2505 Desampylase Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_19255
Feature type CDS
Gene rri1
Product Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
Location 10204 - 10911 (strand: 1)
Length 708 (nucleotides) / 235 (amino acids)
In genomic island -

Contig

Accession ZDB_712
Length 13402 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2
Orthogroup size 27
N. genomes 7

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Genomic region

Domains

PF00877 NlpC/P60 family
PF14464 Prokaryotic homologs of the JAB domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1310 Posttranslational modification, protein turnover, chaperones (O) O Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K26975 Enterobacteria phage tail tip assembly protein K Virion - Bacteriophage lambda -

Protein Sequence

MRKNIQAAIFSHAEREYPRECCGVIAQKSRVVKYFPCRNVAATPEEHFVLSPEDYAAAEDWGTVTGIVHSHPDATTQPSELDKAQCDALGVPWYIVSWPEGDLRTVQPRGEQPLLGRPFVLGFTDCWGLVMSWFRQEHCIELPDYRVDYPWWEQGENRYADNWQEAGFIQVDDPQPGDLIVMQVQAPVANHAGILLPDNMLLHHLYGHLSQRVPYGGYWRDRTVMVLRHKLHMTT

Flanking regions ( +/- flanking 50bp)

CCGATCCCGTTTGGCGGCTTTCCGGGAACATCACTACTGAGGAAATAGGGATGCGTAAAAATATCCAGGCAGCCATTTTTTCACATGCTGAACGTGAGTATCCCCGCGAATGCTGCGGGGTGATCGCGCAAAAATCCCGGGTGGTGAAATACTTTCCCTGCCGCAATGTCGCGGCCACGCCGGAAGAGCACTTCGTATTATCACCGGAGGATTACGCCGCTGCTGAGGATTGGGGGACGGTGACCGGTATTGTGCACAGTCACCCGGATGCCACCACTCAGCCGTCAGAACTGGATAAAGCACAGTGTGATGCCCTCGGTGTGCCGTGGTATATCGTCAGCTGGCCGGAGGGGGATCTGCGGACTGTTCAGCCACGCGGTGAGCAGCCATTACTCGGTCGGCCGTTTGTACTCGGGTTTACGGACTGCTGGGGGCTGGTCATGAGCTGGTTCCGGCAGGAACACTGCATTGAACTGCCTGATTACCGGGTGGATTACCCCTGGTGGGAACAGGGGGAAAACCGTTATGCGGACAACTGGCAGGAGGCCGGATTTATTCAGGTTGATGATCCGCAGCCCGGAGATTTGATAGTGATGCAAGTGCAGGCTCCGGTCGCCAATCATGCCGGTATTTTATTGCCTGATAACATGCTCCTGCATCACTTATACGGTCACCTGAGCCAGCGGGTTCCGTATGGCGGTTATTGGCGTGATCGCACAGTTATGGTGCTGAGACATAAATTACACATGACAACGTGACTTGGTGCTATTACCCTGAATGACAATTGTTTATTAAATATGTATAGGGG