Homologs in group_131

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10 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19340 FBDBKF_19340 95.7 Morganella morganii S1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
EHELCC_15145 EHELCC_15145 100.0 Morganella morganii S2 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
EHELCC_19320 EHELCC_19320 95.7 Morganella morganii S2 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
NLDBIP_15675 NLDBIP_15675 100.0 Morganella morganii S4 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
NLDBIP_19450 NLDBIP_19450 95.7 Morganella morganii S4 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
LHKJJB_16165 LHKJJB_16165 100.0 Morganella morganii S3 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
LHKJJB_19355 LHKJJB_19355 95.7 Morganella morganii S3 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
HKOGLL_15285 HKOGLL_15285 100.0 Morganella morganii S5 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
HKOGLL_19255 HKOGLL_19255 95.7 Morganella morganii S5 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
PMI_RS02600 PMI_RS02600 58.8 Proteus mirabilis HI4320 - C40 family peptidase

Distribution of the homologs in the orthogroup group_131

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_131

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O64333 5.99e-122 349 72 2 233 3 gene Tail tip assembly protein K Escherichia phage N15 19
P03729 6.55e-28 108 37 4 183 3 K Tail tip assembly protein K Escherichia phage lambda

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_18570
Feature type CDS
Gene rri1
Product Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
Location 4180 - 4890 (strand: -1)
Length 711 (nucleotides) / 236 (amino acids)

Contig

Accession contig_35
Length 30077 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_131
Orthogroup size 11
N. genomes 6

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Genomic region

Domains

PF00877 NlpC/P60 family
PF14464 Prokaryotic homologs of the JAB domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1310 Posttranslational modification, protein turnover, chaperones (O) O Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif

Protein Sequence

MMRKNIQAAIFAHAEREYPRECCGVIAQKSRVVKYFPCRNIAATPEEHFVLSPEDYAAAEDWGTVTGIVHSHPDATTRPSELDNAQCDALGVPWYIVSWPEGDLRTVQPRGEQPLLGRPFVLGFTDCWGLVMSWFRQERGIELPDYRVDYPWWEQGENRYADNWREAGFIQVDDPQPGDVIVMQVQAPVANHAGILLGDNMLLHHLYGHLSQRVPYGGYWRDRTVMVLRHKLHMTK

Flanking regions ( +/- flanking 50bp)

AATCCGATCCCGTTTGGCGGCTTTCCGGGAACCTCATTACTGAGGAAATAATGATGCGTAAAAACATTCAGGCAGCCATTTTTGCCCACGCAGAACGTGAATACCCCCGCGAGTGCTGCGGGGTGATCGCGCAAAAATCCCGGGTGGTGAAATACTTTCCCTGTCGTAATATTGCGGCCACACCGGAAGAGCACTTCGTATTATCGCCGGAGGATTACGCCGCTGCGGAGGATTGGGGTACGGTGACCGGTATTGTTCACAGTCATCCGGATGCCACCACCCGGCCGTCAGAACTGGATAACGCACAGTGCGATGCCCTCGGTGTGCCGTGGTATATCGTCAGCTGGCCGGAGGGGGATCTGCGGACTGTTCAGCCACGCGGTGAGCAGCCATTACTTGGGCGACCTTTTGTGCTCGGGTTTACGGACTGCTGGGGGCTGGTAATGAGTTGGTTCAGGCAGGAGCGCGGCATTGAACTGCCGGATTACCGGGTCGACTATCCTTGGTGGGAGCAGGGCGAAAACCGTTACGCCGATAACTGGCGGGAAGCGGGATTTATTCAGGTTGATGATCCGCAACCCGGTGATGTGATAGTGATGCAGGTACAGGCACCGGTCGCCAATCATGCCGGTATTCTGCTGGGTGATAATATGCTGCTGCATCATTTGTACGGACACCTGAGTCAGCGGGTTCCGTATGGCGGTTATTGGCGTGATCGCACAGTTATGGTGCTGAGACATAAATTACACATGACAAAATGAACACTGGTAGCTACCCTTATATCGCGATATTTTTGCAGCATATAAAATAT