Homologs in group_131

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10 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18570 FBDBKF_18570 95.7 Morganella morganii S1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
FBDBKF_19340 FBDBKF_19340 100.0 Morganella morganii S1 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
EHELCC_15145 EHELCC_15145 95.7 Morganella morganii S2 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
EHELCC_19320 EHELCC_19320 100.0 Morganella morganii S2 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
NLDBIP_15675 NLDBIP_15675 95.7 Morganella morganii S4 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
LHKJJB_16165 LHKJJB_16165 95.7 Morganella morganii S3 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
LHKJJB_19355 LHKJJB_19355 100.0 Morganella morganii S3 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
HKOGLL_15285 HKOGLL_15285 95.7 Morganella morganii S5 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
HKOGLL_19255 HKOGLL_19255 100.0 Morganella morganii S5 rri1 Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
PMI_RS02600 PMI_RS02600 59.5 Proteus mirabilis HI4320 - C40 family peptidase

Distribution of the homologs in the orthogroup group_131

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_131

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O64333 5.4e-123 352 73 2 233 3 gene Tail tip assembly protein K Escherichia phage N15 19
P03729 7.46e-26 102 36 4 183 3 K Tail tip assembly protein K Escherichia phage lambda
D4GTS4 0.000452 42 31 5 115 1 HVO_2505 Desampylase Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_19450
Feature type CDS
Gene rri1
Product Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif
Location 10204 - 10911 (strand: 1)
Length 708 (nucleotides) / 235 (amino acids)

Contig

Accession ZDB_548
Length 13402 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_131
Orthogroup size 11
N. genomes 6

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Genomic region

Domains

PF00877 NlpC/P60 family
PF14464 Prokaryotic homologs of the JAB domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1310 Posttranslational modification, protein turnover, chaperones (O) O Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif

Protein Sequence

MRKNIQAAIFSHAEREYPRECCGVIAQKSRVVKYFPCRNVAATPEEHFVLSPEDYAAAEDWGTVTGIVHSHPDATTQPSELDKAQCDALGVPWYIVSWPEGDLRTVQPRGEQPLLGRPFVLGFTDCWGLVMSWFRQEHCIELPDYRVDYPWWEQGENRYADNWQEAGFIQVDDPQPGDLIVMQVQAPVANHAGILLPDNMLLHHLYGHLSQRVPYGGYWRDRTVMVLRHKLHMTT

Flanking regions ( +/- flanking 50bp)

CCGATCCCGTTTGGCGGCTTTCCGGGAACATCACTACTGAGGAAATAGGGATGCGTAAAAATATCCAGGCAGCCATTTTTTCACATGCTGAACGTGAGTATCCCCGCGAATGCTGCGGGGTGATCGCGCAAAAATCCCGGGTGGTGAAATACTTTCCCTGCCGCAATGTCGCGGCCACGCCGGAAGAGCACTTCGTATTATCACCGGAGGATTACGCCGCTGCTGAGGATTGGGGGACGGTGACCGGTATTGTGCACAGTCACCCGGATGCCACCACTCAGCCGTCAGAACTGGATAAAGCACAGTGTGATGCCCTCGGTGTGCCGTGGTATATCGTCAGCTGGCCGGAGGGGGATCTGCGGACTGTTCAGCCACGCGGTGAGCAGCCATTACTCGGTCGGCCGTTTGTACTCGGGTTTACGGACTGCTGGGGGCTGGTCATGAGCTGGTTCCGGCAGGAACACTGCATTGAACTGCCTGATTACCGGGTGGATTACCCCTGGTGGGAACAGGGGGAAAACCGTTATGCGGACAACTGGCAGGAGGCCGGATTTATTCAGGTTGATGATCCGCAGCCCGGAGATTTGATAGTGATGCAAGTGCAGGCTCCGGTCGCCAATCATGCCGGTATTTTATTGCCTGATAACATGCTCCTGCATCACTTATACGGTCACCTGAGCCAGCGGGTTCCGTATGGCGGTTATTGGCGTGATCGCACAGTTATGGTGCTGAGACATAAATTACACATGACAACGTGACTTGGTGCTATTACCCTGAATGACAATTGTTTATTAAATATGTATAGGGG