PF00474


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00474, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 23 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00474
Description Sodium:solute symporter family

Occurence in the database

PF00474 is associated with 23 different proteins (see tab "Protein list" and "Profile")
The 23 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_224 FBDBKF_00500 79659 81152 -1 putP sodium/proline symporter PutP Morganella morganii S1
1 group_1606 FBDBKF_10495 55100 56755 1 actP Na+(or H+)/acetate symporter ActP Morganella morganii S1
2 group_391 FBDBKF_14950 2817 4307 -1 putP Na+/proline symporter Morganella morganii S1
3 group_224 EHELCC_01045 227716 229209 1 putP sodium/proline symporter PutP Morganella morganii S2
4 group_391 EHELCC_11295 80599 82089 1 putP Na+/proline symporter Morganella morganii S2
5 group_1606 EHELCC_14830 55090 56745 1 actP Na+(or H+)/acetate symporter ActP Morganella morganii S2
6 group_224 NLDBIP_02415 450927 452420 -1 putP sodium/proline symporter PutP Morganella morganii S4
7 group_391 NLDBIP_11640 80599 82089 1 putP Na+/proline symporter Morganella morganii S4
8 group_1606 NLDBIP_14660 55090 56745 1 actP Na+(or H+)/acetate symporter ActP Morganella morganii S4
9 group_224 LHKJJB_03930 58168 59661 -1 putP sodium/proline symporter PutP Morganella morganii S3
10 group_391 LHKJJB_11500 80599 82089 1 putP Na+/proline symporter Morganella morganii S3
11 group_1606 LHKJJB_14685 84981 86636 -1 actP Na+(or H+)/acetate symporter ActP Morganella morganii S3
12 group_224 HKOGLL_03115 227921 229414 1 putP sodium/proline symporter PutP Morganella morganii S5
13 group_391 HKOGLL_10110 80599 82089 1 putP Na+/proline symporter Morganella morganii S5
14 group_1606 HKOGLL_13305 84981 86636 -1 actP Na+(or H+)/acetate symporter ActP Morganella morganii S5
15 group_391 F4V73_RS04925 1046182 1047672 1 sodium:solute symporter family protein Morganella psychrotolerans
16 group_224 F4V73_RS06510 1355290 1356777 -1 putP sodium/proline symporter PutP Morganella psychrotolerans
17 group_1606 F4V73_RS14205 56966 58615 1 cation acetate symporter Morganella psychrotolerans
18 group_224 PMI_RS07890 1725788 1727272 -1 putP sodium/proline symporter PutP Proteus mirabilis HI4320
19 group_391 PMI_RS09590 2093852 2095486 -1 sodium/sugar symporter Proteus mirabilis HI4320
20 group_391 PMI_RS14715 3262292 3263782 -1 sodium:solute symporter Proteus mirabilis HI4320
21 group_1606 PMI_RS15035 3335430 3337085 1 cation acetate symporter Proteus mirabilis HI4320
22 group_224 PMI_RS18035 3962153 3963598 -1 panF sodium/pantothenate symporter Proteus mirabilis HI4320