Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00474, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 23 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF00474 |
---|---|
Description | Sodium:solute symporter family |
Occurence in the database
PF00474 is associated with 23 different proteins (see tab "Protein list" and "Profile") |
The 23 proteins are classified into 3 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_224 | FBDBKF_00500 | 79659 | 81152 | -1 | putP | sodium/proline symporter PutP | Morganella morganii S1 |
1 | group_1606 | FBDBKF_10495 | 55100 | 56755 | 1 | actP | Na+(or H+)/acetate symporter ActP | Morganella morganii S1 |
2 | group_391 | FBDBKF_14950 | 2817 | 4307 | -1 | putP | Na+/proline symporter | Morganella morganii S1 |
3 | group_224 | EHELCC_01045 | 227716 | 229209 | 1 | putP | sodium/proline symporter PutP | Morganella morganii S2 |
4 | group_391 | EHELCC_11295 | 80599 | 82089 | 1 | putP | Na+/proline symporter | Morganella morganii S2 |
5 | group_1606 | EHELCC_14830 | 55090 | 56745 | 1 | actP | Na+(or H+)/acetate symporter ActP | Morganella morganii S2 |
6 | group_224 | NLDBIP_02415 | 450927 | 452420 | -1 | putP | sodium/proline symporter PutP | Morganella morganii S4 |
7 | group_391 | NLDBIP_11640 | 80599 | 82089 | 1 | putP | Na+/proline symporter | Morganella morganii S4 |
8 | group_1606 | NLDBIP_14660 | 55090 | 56745 | 1 | actP | Na+(or H+)/acetate symporter ActP | Morganella morganii S4 |
9 | group_224 | LHKJJB_03930 | 58168 | 59661 | -1 | putP | sodium/proline symporter PutP | Morganella morganii S3 |
10 | group_391 | LHKJJB_11500 | 80599 | 82089 | 1 | putP | Na+/proline symporter | Morganella morganii S3 |
11 | group_1606 | LHKJJB_14685 | 84981 | 86636 | -1 | actP | Na+(or H+)/acetate symporter ActP | Morganella morganii S3 |
12 | group_224 | HKOGLL_03115 | 227921 | 229414 | 1 | putP | sodium/proline symporter PutP | Morganella morganii S5 |
13 | group_391 | HKOGLL_10110 | 80599 | 82089 | 1 | putP | Na+/proline symporter | Morganella morganii S5 |
14 | group_1606 | HKOGLL_13305 | 84981 | 86636 | -1 | actP | Na+(or H+)/acetate symporter ActP | Morganella morganii S5 |
15 | group_391 | F4V73_RS04925 | 1046182 | 1047672 | 1 | sodium:solute symporter family protein | Morganella psychrotolerans | |
16 | group_224 | F4V73_RS06510 | 1355290 | 1356777 | -1 | putP | sodium/proline symporter PutP | Morganella psychrotolerans |
17 | group_1606 | F4V73_RS14205 | 56966 | 58615 | 1 | cation acetate symporter | Morganella psychrotolerans | |
18 | group_224 | PMI_RS07890 | 1725788 | 1727272 | -1 | putP | sodium/proline symporter PutP | Proteus mirabilis HI4320 |
19 | group_391 | PMI_RS09590 | 2093852 | 2095486 | -1 | sodium/sugar symporter | Proteus mirabilis HI4320 | |
20 | group_391 | PMI_RS14715 | 3262292 | 3263782 | -1 | sodium:solute symporter | Proteus mirabilis HI4320 | |
21 | group_1606 | PMI_RS15035 | 3335430 | 3337085 | 1 | cation acetate symporter | Proteus mirabilis HI4320 | |
22 | group_224 | PMI_RS18035 | 3962153 | 3963598 | -1 | panF | sodium/pantothenate symporter | Proteus mirabilis HI4320 |