PF00006


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00006, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 36 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00006
Description ATP synthase alpha/beta family, nucleotide-binding domain

Occurence in the database

PF00006 is associated with 36 different proteins (see tab "Protein list" and "Profile")
The 36 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_225 FBDBKF_00605 100567 101931 1 fliI flagellar protein export ATPase FliI Morganella morganii S1
1 group_1327 FBDBKF_08215 20281 21540 1 rho transcription termination factor Rho Morganella morganii S1
2 group_1459 FBDBKF_09330 96475 97767 -1 sctN type III secretion system ATPase SctN Morganella morganii S1
3 group_2070 FBDBKF_15485 21378 22919 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S1
4 group_2072 FBDBKF_15495 23872 25254 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S1
5 group_225 EHELCC_00940 206937 208301 -1 fliI flagellar protein export ATPase FliI Morganella morganii S2
6 group_1459 EHELCC_10080 48337 49629 1 sctN type III secretion system ATPase SctN Morganella morganii S2
7 group_1327 EHELCC_13310 142185 143444 -1 rho transcription termination factor Rho Morganella morganii S2
8 group_2070 EHELCC_15845 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S2
9 group_2072 EHELCC_15855 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S2
10 group_225 NLDBIP_02520 471835 473199 1 fliI flagellar protein export ATPase FliI Morganella morganii S4
11 group_1459 NLDBIP_10425 26608 27900 1 sctN type III secretion system ATPase SctN Morganella morganii S4
12 group_1327 NLDBIP_13650 142185 143444 -1 rho transcription termination factor Rho Morganella morganii S4
13 group_2072 NLDBIP_16515 56109 57491 -1 atpD F0F1 ATP synthase subunit beta Morganella morganii S4
14 group_2070 NLDBIP_16525 58444 59985 -1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S4
15 group_225 LHKJJB_04035 79076 80440 1 fliI flagellar protein export ATPase FliI Morganella morganii S3
16 group_1459 LHKJJB_10930 163628 164920 -1 sctN type III secretion system ATPase SctN Morganella morganii S3
17 group_1327 LHKJJB_12905 18999 20258 1 rho transcription termination factor Rho Morganella morganii S3
18 group_2070 LHKJJB_16280 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S3
19 group_2072 LHKJJB_16290 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S3
20 group_225 HKOGLL_03010 207142 208506 -1 fliI flagellar protein export ATPase FliI Morganella morganii S5
21 group_1327 HKOGLL_12125 142185 143444 -1 rho transcription termination factor Rho Morganella morganii S5
22 group_1459 HKOGLL_13990 96929 98221 -1 sctN type III secretion system ATPase SctN Morganella morganii S5
23 group_2070 HKOGLL_16050 20678 22219 1 atpA F0F1 ATP synthase subunit alpha Morganella morganii S5
24 group_2072 HKOGLL_16060 23172 24554 1 atpD F0F1 ATP synthase subunit beta Morganella morganii S5
25 group_225 F4V73_RS06615 1377484 1378848 1 fliI flagellar protein export ATPase FliI Morganella psychrotolerans
26 group_225 F4V73_RS08315 1723851 1725170 1 FliI/YscN family ATPase Morganella psychrotolerans
27 group_1459 F4V73_RS10635 257461 258753 1 sctN type III secretion system ATPase SctN Morganella psychrotolerans
28 group_2072 F4V73_RS17650 171887 173269 -1 atpD F0F1 ATP synthase subunit beta Morganella psychrotolerans
29 group_2070 F4V73_RS17660 174221 175762 -1 atpA F0F1 ATP synthase subunit alpha Morganella psychrotolerans
30 group_1327 F4V73_RS18765 21442 22701 1 rho transcription termination factor Rho Morganella psychrotolerans
31 group_225 PMI_RS07975 1746683 1748056 1 fliI flagellar protein export ATPase FliI Proteus mirabilis HI4320
32 group_1459 PMI_RS13265 2943068 2944366 -1 sctN type III secretion system ATPase SctN Proteus mirabilis HI4320
33 group_2070 PMI_RS15165 3364028 3365569 1 atpA F0F1 ATP synthase subunit alpha Proteus mirabilis HI4320
34 group_2072 PMI_RS15175 3366525 3367907 1 atpD F0F1 ATP synthase subunit beta Proteus mirabilis HI4320
35 group_1327 PMI_RS16475 3633442 3634701 1 rho transcription termination factor Rho Proteus mirabilis HI4320