Help to interpret the results
Four outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected GI cluster GIC35
GIs list: lists the 1 occurences of the GI cluster within the database. The table reports information on each occurence.
Orthogroup list: lists the 42 orthogroups associated with the GI cluster
Profile: phylogenetic tree annotated with
- the presence of the GI cluster of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) associated with the GI cluster in each genome.
Orthogroups are shown in red if they are found withinin the that particular GI cluster in a given genome , in green otherwise, i.e. if the orthogroup is present in the genome but not in that GI cluster.
Green homologs (same orthogroup) are not found inside the considered GI cluster.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or GI cluster prediction.
Description
| Cluster ID | GIC35 |
|---|---|
| Length | 24643 |
Occurence in the database
| GIC35 is associated with 1 different genomic islands |
Genes in magenta are AMR genes, while purple correspond to VF genes.
Links are coloured wiht a scale of gray reflecting the sequence identity: dark gray for highly conserved, light grey for features with less identity. Click on the link to visualise the percentage of identity. Beginning and end of the regions are shown as dashed line if the region shows a complete circular contig, a double line if the start or end of the region matches the start or end of a linear contig and a single line otherwise.
Genomic regions
| ID | Organism | Bioentry | Start | End | Length | |
|---|---|---|---|---|---|---|
| 68 | GI68 | Morganella psychrotolerans | NZ_VXKB01000001 | 1290545 | 1315188 | 24643 |
| Orthogroup | Products | Genes | |
|---|---|---|---|
| 3844 | group_3844 | - | M15 family metallopeptidase (2) |
| 3845 | group_3845 | - | phage holin family protein (2) |
| 3846 | group_3846 | - | DUF1364 domain-containing protein (2) |
| 3847 | group_3847 | - | ParA family protein (2) |
| 2372 | group_2372 | - | Exodeoxyribonuclease VIII (5) PD-(D/E)XK nuclease-like domain-containing protein (2) |
| 4640 | group_4640 | - | hypothetical protein (1) |
| 4387 | group_4387 | - | hypothetical protein (1) |
| 2501 | group_2501 | - | DUF2591 domain-containing protein (5) hypothetical protein (1) |
| 1708 | group_1708 | - | DUF3024 domain-containing protein (7) |
| 3377 | group_3377 | rusA (4) | Crossover junction endodeoxyribonuclease RusA (4) RusA family crossover junction endodeoxyribonuclease (1) |
| 4406 | group_4406 | - | Nmad5 family putative nucleotide modification protein (1) |
| 2500 | group_2500 | - | DNA replication protein (5) replication protein P (1) |
| 3781 | group_3781 | - | Bacteriophage protein (1) hypothetical protein (1) |
| 3782 | group_3782 | - | DUF4054 domain-containing protein (2) |
| 3783 | group_3783 | - | Phage protein (1) hypothetical protein (1) |
| 3784 | group_3784 | - | Phage protein (1) DUF2184 domain-containing protein (1) |
| 3785 | group_3785 | - | Phage protein (1) hypothetical protein (1) |
| 3786 | group_3786 | - | Phage protein (1) DUF2213 domain-containing protein (1) |
| 3787 | group_3787 | - | Phage head morphogenesis protein (1) phage minor head protein (1) |
| 3788 | group_3788 | terL (1) | Terminase large subunit gp17-like C-terminal domain-containing protein (1) phage terminase large subunit (1) |
| 3789 | group_3789 | - | Phage antitermination protein Q (1) antiterminator Q family protein (1) |
| 2894 | group_2894 | - | hypothetical protein (6) |
| 2895 | group_2895 | - | DNA-binding protein (5) hypothetical protein (1) |
| 2896 | group_2896 | - | hypothetical protein (6) |
| 72 | group_72 | lexA (10) | LexA family transcriptional regulator (6) SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase) (5) S24 family peptidase (2) |
| 3790 | group_3790 | - | hypothetical protein (2) |
| 4819 | group_4819 | - | hypothetical protein (1) |
| 2891 | group_2891 | tolA (5) | Cell envelope biogenesis protein TolA (5) hypothetical protein (1) |
| 2890 | group_2890 | - | Phage protein (5) hypothetical protein (1) |
| 214 | group_214 | - | DNA replication protein (5) replication protein (1) hypothetical protein (1) conserved phage C-terminal domain-containing protein (1) |
| 4312 | group_4312 | - | transcriptional regulator (1) |
| 4697 | group_4697 | - | recombination protein NinB (1) |
| 4829 | group_4829 | - | Lar family restriction alleviation protein (1) |
| 2889 | group_2889 | - | hypothetical protein (6) |
| 4464 | group_4464 | - | hypothetical protein (1) |
| 3700 | group_3700 | - | DUF1073 domain-containing protein (3) |
| 4213 | group_4213 | - | hypothetical protein (1) |
| 507 | group_507 | - | hypothetical protein (7) |
| 505 | group_505 | - | Terminase small subunit (6) terminase small subunit (1) |
| 123 | group_123 | - | DUF2570 domain-containing protein (10) hypothetical protein (1) |
| 1916 | group_1916 | - | Fumarase D (5) hypothetical protein (1) DUF2767 family protein (1) |
| 3070 | group_3070 | - | Enterohemolysin (5) RecT family recombinase (1) |
