Orthogroup:group_1916


Homologs in group_1916

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14265 FBDBKF_14265 Morganella morganii S1 truA tRNA pseudouridine(38-40) synthase TruA
EHELCC_08015 EHELCC_08015 Morganella morganii S2 truA tRNA pseudouridine(38-40) synthase TruA
NLDBIP_08340 NLDBIP_08340 Morganella morganii S4 truA tRNA pseudouridine(38-40) synthase TruA
LHKJJB_05925 LHKJJB_05925 Morganella morganii S3 truA tRNA pseudouridine(38-40) synthase TruA
HKOGLL_04990 HKOGLL_04990 Morganella morganii S5 truA tRNA pseudouridine(38-40) synthase TruA
F4V73_RS02645 F4V73_RS02645 Morganella psychrotolerans truA tRNA pseudouridine(38-40) synthase TruA
PMI_RS08775 PMI_RS08775 Proteus mirabilis HI4320 truA tRNA pseudouridine(38-40) synthase TruA

Distribution of group_1916 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1916 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1916

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1916.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 truA 7

Product

# Product Occurence
1 tRNA pseudouridine(38-40) synthase TruA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0101 7 J Translation, ribosomal structure and biogenesis (J) tRNA U38,U39,U40 pseudouridine synthase TruA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06173 7 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01416 7 tRNA pseudouridine synthase

Annotations of the 511 SwissProt hits

Annotation Number of occurrences
tRNA pseudouridine synthase A 496
tRNA pseudouridine synthase A 1 8
tRNA pseudouridine synthase A 2 7

Protein length

Min length 273
Max length 289
Mean length (sd) 275.3 (6.0)
Median length 273.0

Protein length distribution