Orthogroup:group_3700


Homologs in group_3700

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3 homologs were identified in 3 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_12480 FBDBKF_12480 Morganella morganii S1 cspC Cold shock protein, CspA family
F4V73_RS12560 F4V73_RS12560 Morganella psychrotolerans - cold shock domain-containing protein
PMI_RS14755 PMI_RS14755 Proteus mirabilis HI4320 - cold shock domain-containing protein

Distribution of group_3700 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3700 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3700

Orthogroup content: 3 members

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This page summarizes the annotation of all members of the orthologous group group_3700.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cspC 1
2 - 2

Product

# Product Occurence
1 Cold shock protein, CspA family 1
2 cold shock domain-containing protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1278 3 K Transcription (K) Cold shock protein, CspA family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00313 3 'Cold-shock' DNA-binding domain

Annotations of the 4 SwissProt hits

Annotation Number of occurrences
Cold shock protein CapB 2
Cold shock-like protein CspA 1
Major cold shock protein CspA 1

Protein length

Min length 158
Max length 160
Mean length (sd) 159.0 (1.0)
Median length 159.0

Protein length distribution