Help to interpret the results
Four outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected GI cluster GIC25
GIs list: lists the 1 occurences of the GI cluster within the database. The table reports information on each occurence.
Orthogroup list: lists the 19 orthogroups associated with the GI cluster
Profile: phylogenetic tree annotated with
- the presence of the GI cluster of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) associated with the GI cluster in each genome.
Orthogroups are shown in red if they are found withinin the that particular GI cluster in a given genome , in green otherwise, i.e. if the orthogroup is present in the genome but not in that GI cluster.
Green homologs (same orthogroup) are not found inside the considered GI cluster.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or GI cluster prediction.
Description
| Cluster ID | GIC25 |
|---|---|
| Length | 12632 |
Occurence in the database
| GIC25 is associated with 1 different genomic islands |
Genes in magenta are AMR genes, while purple correspond to VF genes.
Links are coloured wiht a scale of gray reflecting the sequence identity: dark gray for highly conserved, light grey for features with less identity. Click on the link to visualise the percentage of identity. Beginning and end of the regions are shown as dashed line if the region shows a complete circular contig, a double line if the start or end of the region matches the start or end of a linear contig and a single line otherwise.
Genomic regions
| ID | Organism | Bioentry | Start | End | Length | |
|---|---|---|---|---|---|---|
| 55 | GI55 | Proteus mirabilis HI4320 | NC_010554 | 555784 | 568416 | 12632 |
| Orthogroup | Products | Genes | |
|---|---|---|---|
| 2 | group_2 | rri1 (10) | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif (10) Phage tail protein (4) Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif (10) NlpC/P60 family protein (1) C40 family peptidase (2) |
| 4 | group_4 | gp18 (10) | phage minor tail protein L (25) |
| 6 | group_6 | - | Phage-related protein, tail component (10) Tail assembly protein (5) Phage tail assembly protein I (5) tail assembly protein (2) |
| 3847 | group_3847 | - | ParA family protein (2) |
| 7 | group_7 | - | Phage-related protein (10) Phage tail protein (10) phage tail protein (2) |
| 4240 | group_4240 | - | phage tail assembly chaperone (1) |
| 19 | group_19 | - | Phage tail length tape-measure protein 1 (2) Phage-related minor tail protein (5) hypothetical protein (7) phage tail tape measure protein (2) |
| 4630 | group_4630 | - | DUF1799 domain-containing protein (1) |
| 4648 | group_4648 | - | toxin-antitoxin system HicB family antitoxin (1) |
| 4527 | group_4527 | - | hypothetical protein (1) |
| 4916 | group_4916 | - | hypothetical protein (1) |
| 4033 | group_4033 | - | hypothetical protein (1) |
| 4813 | group_4813 | - | hypothetical protein (1) |
| 2900 | group_2900 | - | phage antirepressor N-terminal domain-containing protein (6) |
| 4052 | group_4052 | - | hypothetical protein (1) |
| 4054 | group_4054 | - | Arc family DNA-binding protein (1) |
| 4059 | group_4059 | - | hypothetical protein (1) |
| 2921 | group_2921 | - | Lipoprotein (5) hypothetical protein (1) |
| 3962 | group_3962 | - | hypothetical protein (1) |
