COG4566
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4566, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | DNA-binding response regulator, FixJ family, consists of REC and HTH domains |
---|---|
Function(s) descr. | Signal transduction mechanisms (T) Transcription (K) |
Occurence in the database
COG4566 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_496 | FBDBKF_00905 | 164902 | 165513 | 1 | ttrR | tetrathionate respiration response regulator TtrR | Morganella morganii S1 |
1 | group_1286 | FBDBKF_07815 | 88686 | 89315 | -1 | fixJ | DNA-binding response regulator, FixJ family, consists of REC and HTH domains | Morganella morganii S1 |
2 | group_1297 | FBDBKF_07940 | 119782 | 120411 | -1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S1 |
3 | group_496 | EHELCC_00640 | 143355 | 143966 | -1 | ttrR | tetrathionate respiration response regulator TtrR | Morganella morganii S2 |
4 | group_1286 | EHELCC_13645 | 62880 | 63509 | -1 | fixJ | DNA-binding response regulator, FixJ family, consists of REC and HTH domains | Morganella morganii S2 |
5 | group_1297 | EHELCC_13770 | 93976 | 94605 | -1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S2 |
6 | group_496 | NLDBIP_02820 | 536170 | 536781 | 1 | ttrR | tetrathionate respiration response regulator TtrR | Morganella morganii S4 |
7 | group_1286 | NLDBIP_14090 | 83755 | 84384 | -1 | fixJ | DNA-binding response regulator, FixJ family, consists of REC and HTH domains | Morganella morganii S4 |
8 | group_1297 | NLDBIP_14215 | 114851 | 115480 | -1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S4 |
9 | group_496 | LHKJJB_04335 | 143411 | 144022 | 1 | ttrR | tetrathionate respiration response regulator TtrR | Morganella morganii S3 |
10 | group_1297 | LHKJJB_08635 | 44269 | 44898 | 1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S3 |
11 | group_1286 | LHKJJB_08760 | 75365 | 75994 | 1 | fixJ | DNA-binding response regulator, FixJ family, consists of REC and HTH domains | Morganella morganii S3 |
12 | group_496 | HKOGLL_02710 | 143560 | 144171 | -1 | ttrR | tetrathionate respiration response regulator TtrR | Morganella morganii S5 |
13 | group_1297 | HKOGLL_08185 | 44269 | 44898 | 1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S5 |
14 | group_1286 | HKOGLL_08310 | 75365 | 75994 | 1 | fixJ | DNA-binding response regulator, FixJ family, consists of REC and HTH domains | Morganella morganii S5 |
15 | group_496 | F4V73_RS06900 | 1430643 | 1431254 | 1 | ttrR | tetrathionate respiration response regulator TtrR | Morganella psychrotolerans |
16 | group_1297 | F4V73_RS13045 | 223014 | 223643 | 1 | response regulator transcription factor | Morganella psychrotolerans | |
17 | group_1286 | F4V73_RS13230 | 268459 | 269088 | 1 | LuxR C-terminal-related transcriptional regulator | Morganella psychrotolerans | |
18 | group_1297 | PMI_RS00930 | 230251 | 230883 | -1 | response regulator transcription factor | Proteus mirabilis HI4320 | |
19 | group_496 | PMI_RS08245 | 1802039 | 1802641 | 1 | ttrR | tetrathionate respiration response regulator TtrR | Proteus mirabilis HI4320 |
20 | group_1286 | PMI_RS10800 | 2379289 | 2379924 | 1 | LuxR C-terminal-related transcriptional regulator | Proteus mirabilis HI4320 |