COG4566


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4566, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding response regulator, FixJ family, consists of REC and HTH domains
Function(s) descr. Signal transduction mechanisms (T)
Transcription (K)

Occurence in the database

COG4566 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_496 FBDBKF_00905 164902 165513 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S1
1 group_1286 FBDBKF_07815 88686 89315 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S1
2 group_1297 FBDBKF_07940 119782 120411 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
3 group_496 EHELCC_00640 143355 143966 -1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S2
4 group_1286 EHELCC_13645 62880 63509 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S2
5 group_1297 EHELCC_13770 93976 94605 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
6 group_496 NLDBIP_02820 536170 536781 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S4
7 group_1286 NLDBIP_14090 83755 84384 -1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S4
8 group_1297 NLDBIP_14215 114851 115480 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
9 group_496 LHKJJB_04335 143411 144022 1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S3
10 group_1297 LHKJJB_08635 44269 44898 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
11 group_1286 LHKJJB_08760 75365 75994 1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S3
12 group_496 HKOGLL_02710 143560 144171 -1 ttrR tetrathionate respiration response regulator TtrR Morganella morganii S5
13 group_1297 HKOGLL_08185 44269 44898 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
14 group_1286 HKOGLL_08310 75365 75994 1 fixJ DNA-binding response regulator, FixJ family, consists of REC and HTH domains Morganella morganii S5
15 group_496 F4V73_RS06900 1430643 1431254 1 ttrR tetrathionate respiration response regulator TtrR Morganella psychrotolerans
16 group_1297 F4V73_RS13045 223014 223643 1 response regulator transcription factor Morganella psychrotolerans
17 group_1286 F4V73_RS13230 268459 269088 1 LuxR C-terminal-related transcriptional regulator Morganella psychrotolerans
18 group_1297 PMI_RS00930 230251 230883 -1 response regulator transcription factor Proteus mirabilis HI4320
19 group_496 PMI_RS08245 1802039 1802641 1 ttrR tetrathionate respiration response regulator TtrR Proteus mirabilis HI4320
20 group_1286 PMI_RS10800 2379289 2379924 1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320