Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG3209
Protein list: lists the 33 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.
Description
| Description | Uncharacterized conserved protein RhaS, contains 28 RHS repeats |
|---|---|
| Function(s) descr. | General function prediction only (R) |
Occurence in the database
| COG3209 is associated with 33 different proteins |
| The 33 proteins are classified into 6 different orthogroup(s) |
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_3181 | FBDBKF_01285 | 247669 | 248247 | -1 | RHS repeat protein | Morganella morganii S1 | |
| 1 | group_23 | FBDBKF_13030 | 111669 | 114224 | -1 | RHS repeat domain-containing protein | Morganella morganii S1 | |
| 2 | group_23 | FBDBKF_13680 | 9100 | 11898 | -1 | Insecticidal toxin E | Morganella morganii S1 | |
| 3 | group_3412 | FBDBKF_13685 | 11910 | 13253 | -1 | Rhs-family protein | Morganella morganii S1 | |
| 4 | group_23 | FBDBKF_20435 | 589 | 3162 | -1 | RHS repeat domain-containing protein | Morganella morganii S1 | |
| 5 | group_3181 | EHELCC_00260 | 60621 | 61199 | 1 | RHS repeat protein | Morganella morganii S2 | |
| 6 | group_23 | EHELCC_06345 | 281701 | 284256 | -1 | RHS repeat domain-containing protein | Morganella morganii S2 | |
| 7 | group_23 | EHELCC_11350 | 93976 | 96774 | -1 | Insecticidal toxin E | Morganella morganii S2 | |
| 8 | group_3412 | EHELCC_11355 | 96786 | 98129 | -1 | Rhs-family protein | Morganella morganii S2 | |
| 9 | group_23 | EHELCC_19745 | 12 | 2585 | 1 | RHS repeat domain-containing protein | Morganella morganii S2 | |
| 10 | group_3181 | NLDBIP_03200 | 618937 | 619515 | -1 | RHS repeat protein | Morganella morganii S4 | |
| 11 | group_23 | NLDBIP_06665 | 322766 | 325321 | -1 | RHS repeat domain-containing protein | Morganella morganii S4 | |
| 12 | group_23 | NLDBIP_11695 | 93976 | 96774 | -1 | Insecticidal toxin E | Morganella morganii S4 | |
| 13 | group_3412 | NLDBIP_11700 | 96786 | 98129 | -1 | Rhs-family protein | Morganella morganii S4 | |
| 14 | group_23 | NLDBIP_19760 | 589 | 3162 | -1 | RHS repeat domain-containing protein | Morganella morganii S4 | |
| 15 | group_23 | LHKJJB_03545 | 300290 | 302845 | -1 | RHS repeat domain-containing protein | Morganella morganii S3 | |
| 16 | group_3181 | LHKJJB_04715 | 226178 | 226756 | -1 | RHS repeat protein | Morganella morganii S3 | |
| 17 | group_23 | LHKJJB_11555 | 93976 | 96774 | -1 | Insecticidal toxin E | Morganella morganii S3 | |
| 18 | group_3412 | LHKJJB_11560 | 96786 | 98129 | -1 | Rhs-family protein | Morganella morganii S3 | |
| 19 | group_23 | LHKJJB_19725 | 589 | 3162 | -1 | RHS repeat domain-containing protein | Morganella morganii S3 | |
| 20 | group_3181 | HKOGLL_02330 | 60826 | 61404 | 1 | RHS repeat protein | Morganella morganii S5 | |
| 21 | group_23 | HKOGLL_07020 | 222154 | 224709 | -1 | RHS repeat domain-containing protein | Morganella morganii S5 | |
| 22 | group_23 | HKOGLL_10165 | 93976 | 96774 | -1 | Insecticidal toxin E | Morganella morganii S5 | |
| 23 | group_3412 | HKOGLL_10170 | 96786 | 98129 | -1 | Rhs-family protein | Morganella morganii S5 | |
| 24 | group_23 | HKOGLL_19640 | 589 | 3162 | -1 | RHS repeat domain-containing protein | Morganella morganii S5 | |
| 25 | group_4842 | F4V73_RS04230 | 895072 | 895935 | 1 | hypothetical protein | Morganella psychrotolerans | |
| 26 | group_3643 | PMI_RS03745 | 843162 | 845711 | 1 | RHS repeat protein | Proteus mirabilis HI4320 | |
| 27 | group_3643 | PMI_RS19585 | 1135753 | 1136037 | -1 | RHS domain-containing protein | Proteus mirabilis HI4320 | |
| 28 | group_3643 | PMI_RS05220 | 1138955 | 1142842 | -1 | PAAR domain-containing protein | Proteus mirabilis HI4320 | |
| 29 | group_3683 | PMI_RS05435 | 1189744 | 1194855 | 1 | RHS repeat-associated core domain-containing protein | Proteus mirabilis HI4320 | |
| 30 | group_3683 | PMI_RS05455 | 1196255 | 1197397 | 1 | RHS repeat-associated core domain-containing protein | Proteus mirabilis HI4320 | |
| 31 | group_3683 | PMI_RS19260 | 1198047 | 1199657 | 1 | RHS repeat-associated core domain-containing protein | Proteus mirabilis HI4320 | |
| 32 | group_3683 | PMI_RS19270 | 1206547 | 1207938 | 1 | RHS repeat-associated core domain-containing protein | Proteus mirabilis HI4320 |
