Homologs in group_3697

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS05455 PMI_RS05455 81.3 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein
PMI_RS19260 PMI_RS19260 85.6 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein
PMI_RS19270 PMI_RS19270 93.5 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein

Distribution of the homologs in the orthogroup group_3697

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3697

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
E0SGL7 7.55e-159 531 32 23 1165 1 rhsC Putative deoxyribonuclease RhsC Dickeya dadantii (strain 3937)
E0SAK8 1.4e-117 409 29 30 1179 1 rhsA Probable deoxyribonuclease RhsA Dickeya dadantii (strain 3937)
E0SIS2 5.76e-117 408 29 28 1150 1 rhsB Probable deoxyribonuclease RhsB Dickeya dadantii (strain 3937)
P0DUH5 5.1e-64 244 23 37 1243 1 dddA Double-stranded DNA deaminase toxin A Burkholderia cenocepacia (strain H111)
P16917 1.73e-43 178 24 34 1027 3 rhsB Protein RhsB Escherichia coli (strain K12)
P16917 1.07e-08 64 23 17 509 3 rhsB Protein RhsB Escherichia coli (strain K12)
Q9I0F4 4.5e-41 170 23 34 1110 4 tse5 Toxin protein Tse5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P16916 1.85e-30 135 25 35 853 3 rhsA Protein RhsA Escherichia coli (strain K12)
P16916 7.43e-16 87 41 1 114 3 rhsA Protein RhsA Escherichia coli (strain K12)
P16916 1.77e-08 63 23 17 509 3 rhsA Protein RhsA Escherichia coli (strain K12)
P16918 3.1e-28 128 24 34 833 1 rhsC Protein RhsC Escherichia coli (strain K12)
P16918 3.61e-16 89 35 3 156 1 rhsC Protein RhsC Escherichia coli (strain K12)
P16918 1.58e-13 80 23 24 618 1 rhsC Protein RhsC Escherichia coli (strain K12)
P16918 1.84e-07 60 22 16 515 1 rhsC Protein RhsC Escherichia coli (strain K12)
P16919 2e-26 122 25 33 822 2 rhsD Protein RhsD Escherichia coli (strain K12)
P16919 5.48e-18 94 38 2 136 2 rhsD Protein RhsD Escherichia coli (strain K12)
P16919 3.89e-13 79 22 11 422 2 rhsD Protein RhsD Escherichia coli (strain K12)
P16919 2.27e-12 76 24 16 458 2 rhsD Protein RhsD Escherichia coli (strain K12)
P16919 2.11e-09 66 24 11 347 2 rhsD Protein RhsD Escherichia coli (strain K12)
P16919 1.77e-05 53 21 8 384 2 rhsD Protein RhsD Escherichia coli (strain K12)
P16919 0.000111 51 27 10 233 2 rhsD Protein RhsD Escherichia coli (strain K12)
P24211 8.78e-21 102 40 2 136 5 rhsE Putative protein RhsE Escherichia coli (strain K12)
P32109 1.08e-18 90 33 4 181 5 yibJ Putative uncharacterized protein YibJ Escherichia coli (strain K12)
P77779 1.15e-16 88 40 1 120 5 ybfO Putative uncharacterized protein YbfO Escherichia coli (strain K12)
P77759 5.04e-15 80 40 1 100 5 ylbH Putative uncharacterized protein YlbH Escherichia coli (strain K12)
D4G3R4 6.26e-13 78 23 23 537 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 9.81e-12 74 23 25 646 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 1.85e-09 67 22 13 440 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 2.84e-06 56 29 5 159 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 7.87e-06 55 21 27 652 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 0.000352 49 24 3 177 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 0.000361 49 19 10 331 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 0.000519 48 23 8 279 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
Q07833 2.32e-12 76 23 25 646 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 4.96e-12 75 23 26 541 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 5.61e-10 68 22 13 440 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 6.44e-09 65 20 20 574 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 1.73e-06 57 29 5 159 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 1.89e-05 53 21 19 525 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 0.000109 51 25 3 177 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 0.000241 50 23 8 279 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 0.000276 50 19 10 331 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
G4NYJ6 3.09e-12 76 23 22 537 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 6.14e-11 71 23 25 646 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 4.25e-10 68 22 13 440 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 4.04e-07 59 21 23 560 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 4.01e-06 55 28 5 159 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 0.000149 50 21 9 274 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 0.000187 50 24 3 177 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
Q9VYN8 2.59e-05 53 23 19 432 1 Ten-a Teneurin-a Drosophila melanogaster
Q9VYN8 2.72e-05 53 23 27 620 1 Ten-a Teneurin-a Drosophila melanogaster
B6A881 4.75e-05 52 27 10 238 1 yenC1 Toxin subunit YenC1 Yersinia entomophaga
B6A882 0.000814 48 44 2 61 1 yenC2 Toxin subunit YenC2 Yersinia entomophaga

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05435
Feature type CDS
Gene -
Product RHS repeat-associated core domain-containing protein
Location 1189744 - 1194855 (strand: 1)
Length 5112 (nucleotides) / 1703 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3697
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF03527 RHS protein
PF05593 RHS Repeat
PF13665 Toxin PAAR-like domain
PF14436 Bacterial EndoU nuclease
PF20148 Domain of unknown function (DUF6531)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3209 General function prediction only (R) R Uncharacterized conserved protein RhaS, contains 28 RHS repeats

Protein Sequence

MADKHVGDGENQFKVVATTPDVCQVGCSAIPFDSFQSLDAQKQYALSVKARGYCTLNVGSIIKGTQSNTGAGVLSGTSLGGGDCQIITGSPSVRIEGQPAAQDGSLVAMNNNNTLGTLITNVAPPAEPIESNKIPCNNPPVTSELLESLQEMQRKEQESFIGRLRQQKQQADKKRDDSLNDIDKQLTGYIDNIRVDHINTDYSWWNSLYNTSMDGITGLTRGGLGFVESITKSAVEAYHYINPTVLVQNVALNASKKTIEGLIEAENWRLGNNCIEGVKEDVKAKYRALGKLIDEEKEKLENKWKKSDSDKVEIVTRGGLEIATIAAAFLKVGKVAEGANAINKVAEGTKITEISEGTSAVNKATDVIKATETSNISKGSEAIKGAEISATEKGSNAAKGTEVIQSPETPKITSSDNGIKIEGKTESVSTETPPNKVNNSQTENKSTSSSKESDGNSTSSATCKGEPVNVATGDFIQQWPIIQIPGLLPLSLHRTYKSTSNAKGLFGPKWADEWSRCLHILDGNIIYQDSDGANFTFITPTEEIRARNAHAPHFLLTGQRDGDLTLFDSTQQQFLHFNHRQGKYRRLSAITDLNQHRIDFIYNEQSQLVSVKRHDGIALILEYQQDKLVRICSESTTSSPRDFVRCEYDTHGYLSQCHAYQQNHLWHRYSPEGLMVAWGDTDSTELTIDYDEQGRVVATHSPSGFWNDRFIYDDYQRMTTYIDAEGGFSRYYYNDDNLVTRTIDPLWRETYTEWEQRKKIAEINEIGERTEYGYHYNGLLAYIYLPDGKAIYYDYNDYGQLTHFTSAFGDEWQLSYDENGNLTIVTDPQGRQQVYEYSQHGELLKAITPNGAQWQYHYNPAHQLIKTTNPYQHSTEYHSDELGRLLHYTDALNHTTRYQYSTEHASTNGSLSKILLPDGVEQQIDYDSERRVIAVTDGEGKTTRYRYGPFDVLLAMIRPDGSEIRFEYDSLTRLKKVVNANGEVYLYERDKAGQIIREVDFTGREICYRYDRLGRRIATRYPDNHELRWRYNESGLVVEQSEWFEDEQESRCLSTTQYSYNARQQLIKATNPDSVVEFEYDDQGRLCSERINGQEIIHQWNEADNTLALTRFGERELHYAFGALGELTSLQVNQHAPLQFSYNAVGQEYLRRSRAGFVNSSHYTATGLLAHQRAGRGTEQFLQSIQAHPQQPPFCTDVHRSYQYDRAYNVVGIEDDRWRQTRYHYNANDQITETQYSPQWGNQDEKFQYDNNLNITEHLTTPSSSMVPSEAQGAMLQLFQQQQAGRVTRRYTAKGYQDYHYDVNGRLAKKIVHTRGFRPREWRYLWNTQNQLTACFTPKGDCWHYTYDAFGRRLSKTKTVDSDLAHIDPLFPQIKPKITTWRYLWSGDQLIEETPIYADGTLANAQQVQWLYQPGEITPTARYQQGKLHYVVTDHQGTPREIFSEGGQASWAGRLNTWGQMQFWRYRDGKAENDPNYTECPFRFAGQYEDEESGLYYNRFRYYDRETGQYLSPDPIGLLGGLNPYGYVHCPTGWVDPFGLAGGKGNKGAPVTSSFINDDIINHSAKGDWKEASSMPPRDRKTFPNGRLSGGGHGQSAILELEARGILYNIEHTYPNGVRVGNIPSHASKAKRSGTAQSWFPENWSDADIKDAGQAIWRSSNSVRVDMPSGGVMVSGTHNGVFIRVVRDPKGGGSIFPDNTIQP

Flanking regions ( +/- flanking 50bp)

AGCATTAATAGGCGTTTGGGTTCCAGCAGAAACAAAAGGAGCTTGTTGTAATGGCTGATAAACATGTTGGTGACGGTGAAAACCAATTCAAAGTTGTTGCAACCACCCCTGATGTTTGTCAGGTAGGGTGTTCTGCTATTCCTTTTGATAGTTTTCAAAGCTTAGATGCACAAAAGCAATATGCCTTGAGTGTTAAAGCACGTGGATATTGTACCCTGAATGTTGGGTCAATAATCAAAGGAACGCAAAGTAACACGGGGGCCGGTGTATTATCTGGAACCTCATTAGGCGGTGGAGATTGCCAAATTATTACAGGAAGCCCTTCGGTCCGTATTGAAGGTCAACCAGCTGCACAAGATGGTTCATTAGTCGCAATGAACAATAACAATACATTAGGGACTTTAATCACTAATGTTGCACCCCCTGCGGAGCCGATTGAAAGCAATAAAATCCCCTGTAATAACCCGCCCGTGACATCAGAATTGTTAGAATCGCTGCAAGAGATGCAACGAAAAGAGCAAGAAAGTTTTATTGGGCGACTCCGTCAACAAAAACAACAAGCGGATAAAAAAAGAGATGATTCTCTAAATGATATTGACAAACAATTAACTGGATATATTGATAATATTCGAGTTGATCACATTAATACAGATTATTCATGGTGGAACAGTTTATATAATACTTCAATGGATGGAATAACTGGCCTGACTCGTGGTGGTCTTGGTTTTGTTGAAAGTATAACAAAGTCAGCTGTGGAAGCTTATCATTACATAAATCCAACTGTTCTAGTTCAAAACGTGGCTCTAAATGCGAGCAAAAAAACCATCGAGGGACTTATTGAAGCAGAAAACTGGAGGTTGGGGAATAACTGTATTGAAGGTGTTAAGGAAGACGTTAAAGCCAAATATCGTGCATTAGGTAAACTTATTGATGAAGAAAAAGAAAAATTAGAGAATAAATGGAAAAAAAGTGATAGCGATAAAGTCGAAATAGTAACAAGAGGTGGGCTTGAAATAGCGACTATTGCCGCTGCTTTTTTAAAAGTGGGGAAAGTCGCTGAAGGTGCTAATGCTATTAATAAAGTAGCAGAAGGAACTAAAATAACTGAAATATCTGAAGGCACTTCTGCGGTAAATAAAGCTACTGACGTAATAAAAGCGACAGAGACCAGTAATATATCCAAAGGAAGTGAGGCAATCAAAGGGGCAGAAATCTCCGCCACAGAGAAAGGAAGTAATGCCGCTAAAGGTACTGAGGTGATCCAAAGTCCAGAAACACCGAAAATAACCTCATCAGATAATGGCATTAAAATTGAAGGAAAAACGGAAAGCGTATCTACAGAAACGCCACCTAATAAAGTCAATAATAGCCAAACGGAGAACAAGTCGACATCCAGCAGCAAAGAGTCCGATGGAAACAGTACTTCTAGTGCAACCTGTAAAGGTGAACCTGTTAATGTGGCTACTGGTGATTTTATCCAACAGTGGCCAATTATTCAGATACCGGGCTTGTTGCCGTTATCTCTACATCGTACATATAAATCCACATCAAATGCAAAGGGACTTTTTGGACCGAAGTGGGCAGACGAATGGTCACGCTGTTTACATATACTTGATGGAAACATCATCTATCAAGACAGTGATGGTGCTAATTTTACATTTATAACTCCCACAGAGGAGATCCGTGCAAGAAATGCCCATGCTCCCCATTTTTTACTCACCGGACAACGTGATGGCGATTTAACCCTTTTTGATAGTACGCAACAACAGTTTCTACATTTTAATCACAGACAAGGAAAATATCGTCGATTAAGTGCAATCACTGATTTAAATCAGCATCGTATTGATTTTATATATAACGAGCAAAGTCAGCTTGTCAGTGTGAAGCGTCATGATGGCATAGCGTTAATACTCGAATATCAACAGGATAAATTAGTTCGCATTTGCTCTGAAAGCACAACCTCATCTCCTCGAGATTTTGTACGTTGCGAATACGATACTCACGGTTATCTTAGTCAATGTCATGCCTATCAACAAAACCACTTATGGCATCGTTATTCTCCTGAGGGACTCATGGTCGCTTGGGGGGATACTGACAGCACAGAACTGACGATTGATTATGATGAACAAGGGCGTGTTGTTGCTACACATTCACCGTCTGGTTTTTGGAATGATCGCTTTATCTATGATGATTATCAGCGCATGACAACCTACATTGACGCTGAGGGTGGATTTTCACGTTATTATTATAATGATGATAATCTGGTGACTCGCACTATCGATCCATTATGGCGTGAAACGTATACGGAATGGGAACAGCGGAAAAAGATAGCAGAAATCAATGAGATTGGTGAGCGCACAGAGTATGGTTATCACTATAATGGACTGCTTGCCTATATCTATTTACCTGATGGTAAAGCCATTTACTATGATTATAATGACTATGGTCAACTTACCCATTTCACATCGGCCTTTGGCGACGAATGGCAGCTAAGCTATGATGAAAATGGCAATTTAACCATAGTGACAGATCCGCAAGGGCGTCAGCAGGTCTATGAATATAGCCAACATGGTGAATTGCTCAAAGCCATTACGCCCAATGGTGCGCAATGGCAATACCACTATAACCCTGCACATCAACTGATTAAAACCACCAATCCTTATCAACACAGCACAGAATATCATAGTGATGAATTGGGGCGTTTACTGCACTACACTGATGCGTTAAATCACACCACACGCTATCAATACAGCACTGAGCATGCCAGTACCAACGGCAGTCTCAGCAAGATTTTATTACCCGATGGGGTCGAGCAACAGATAGACTATGACAGTGAACGCCGAGTTATCGCGGTGACGGATGGTGAAGGAAAAACCACCCGTTATCGTTATGGGCCTTTTGATGTCTTACTGGCAATGATACGCCCTGACGGCAGTGAAATTCGCTTTGAATATGATTCACTGACACGACTTAAAAAAGTGGTGAATGCGAACGGCGAGGTTTATCTTTACGAACGGGATAAAGCGGGACAAATCATTCGTGAAGTTGATTTTACGGGGCGTGAGATTTGTTATCGCTATGACCGACTAGGACGTCGCATTGCCACTCGCTATCCGGATAACCATGAACTGCGTTGGCGCTATAATGAAAGTGGCTTAGTGGTTGAACAAAGCGAATGGTTTGAAGATGAGCAAGAAAGCCGCTGTTTATCGACGACTCAATATAGCTATAACGCACGTCAACAATTGATAAAAGCGACTAATCCTGACTCGGTGGTTGAATTTGAGTATGATGACCAAGGTCGTTTATGCAGTGAACGTATTAATGGACAAGAGATTATTCATCAATGGAATGAAGCTGATAATACGCTGGCATTGACTCGTTTTGGTGAGCGGGAGTTGCATTATGCTTTTGGGGCGCTGGGGGAATTAACTTCACTGCAAGTCAATCAACATGCACCACTTCAATTCAGCTACAATGCAGTAGGACAAGAGTATTTACGCCGTAGTCGCGCCGGATTTGTCAATTCCAGTCACTATACGGCTACCGGTTTACTGGCTCATCAACGAGCAGGGCGAGGCACCGAACAGTTTTTACAATCGATACAAGCCCATCCCCAACAACCGCCATTTTGTACGGATGTGCACCGCAGTTATCAATATGATCGCGCTTATAATGTGGTGGGCATTGAAGATGATCGCTGGCGACAGACACGTTATCACTATAATGCCAATGACCAAATCACTGAGACACAATACAGTCCACAATGGGGTAATCAGGACGAAAAATTCCAGTATGATAACAACCTCAATATCACGGAGCACTTGACAACGCCGTCCTCGTCGATGGTGCCTTCAGAAGCACAAGGGGCGATGCTACAGCTATTTCAGCAACAGCAAGCAGGACGGGTGACTCGCCGTTACACAGCGAAGGGATATCAAGATTACCATTATGATGTTAATGGGCGATTAGCTAAAAAAATTGTCCATACACGCGGTTTTCGTCCCAGAGAATGGCGCTATTTATGGAACACACAAAATCAGCTGACCGCATGCTTTACGCCTAAAGGGGATTGTTGGCACTATACTTATGATGCTTTTGGTCGACGTCTGAGTAAAACCAAAACTGTCGACAGTGACTTAGCCCATATTGACCCATTATTTCCGCAGATTAAGCCTAAAATCACCACGTGGCGCTATTTATGGTCGGGAGACCAACTGATAGAAGAAACGCCGATATATGCCGATGGCACTCTTGCTAATGCGCAACAAGTTCAATGGCTGTATCAACCCGGAGAAATAACGCCCACCGCGCGTTATCAACAGGGCAAACTGCACTATGTGGTCACCGACCACCAAGGCACCCCGCGAGAGATATTCAGTGAAGGCGGGCAAGCCAGTTGGGCAGGACGATTGAATACGTGGGGCCAAATGCAGTTTTGGCGTTACCGCGACGGTAAAGCTGAGAATGATCCTAATTATACCGAATGTCCTTTTCGCTTTGCGGGGCAATATGAAGATGAAGAAAGTGGCTTGTATTATAATCGCTTTCGCTATTATGATAGGGAAACAGGGCAGTATCTTTCCCCAGATCCGATAGGGTTATTGGGTGGGCTGAATCCCTATGGATATGTGCATTGCCCGACGGGGTGGGTTGATCCGTTTGGGCTGGCGGGTGGTAAGGGGAATAAGGGTGCTCCAGTAACATCTAGTTTTATAAATGATGATATTATTAACCATTCCGCAAAAGGAGATTGGAAAGAAGCTAGCTCTATGCCTCCAAGAGATAGAAAAACCTTTCCAAATGGAAGATTAAGTGGTGGAGGTCATGGTCAATCAGCTATATTAGAACTGGAAGCAAGGGGAATCCTTTATAATATAGAGCACACATATCCAAATGGTGTTCGAGTGGGAAATATACCGAGTCACGCATCGAAAGCAAAACGCTCAGGGACAGCTCAGTCATGGTTTCCTGAAAACTGGAGTGACGCTGATATTAAAGATGCAGGGCAAGCAATATGGAGATCATCGAATAGTGTCCGAGTTGATATGCCTTCTGGGGGAGTTATGGTCTCAGGTACGCATAATGGTGTATTTATTCGTGTTGTCCGCGACCCTAAAGGGGGAGGCTCTATATTCCCTGATAACACAATTCAACCATGATGGACTTGTACTAATATGAAATATAGAATGAATGAAATTAAAATAAAATG