Homologs in group_3697

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS05435 PMI_RS05435 81.3 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein
PMI_RS19260 PMI_RS19260 83.0 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein
PMI_RS19270 PMI_RS19270 88.3 Proteus mirabilis HI4320 - RHS repeat-associated core domain-containing protein

Distribution of the homologs in the orthogroup group_3697

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3697

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
E0SGL7 2.12e-58 208 40 8 305 1 rhsC Putative deoxyribonuclease RhsC Dickeya dadantii (strain 3937)
E0SAK8 4.56e-45 169 41 9 272 1 rhsA Probable deoxyribonuclease RhsA Dickeya dadantii (strain 3937)
E0SIS2 1.36e-42 162 38 11 315 1 rhsB Probable deoxyribonuclease RhsB Dickeya dadantii (strain 3937)
P0DUH5 1.62e-29 124 32 10 280 1 dddA Double-stranded DNA deaminase toxin A Burkholderia cenocepacia (strain H111)
P24211 3.7e-21 99 39 2 136 5 rhsE Putative protein RhsE Escherichia coli (strain K12)
P16917 1.11e-18 91 39 1 129 3 rhsB Protein RhsB Escherichia coli (strain K12)
P16919 1.43e-18 91 38 2 136 2 rhsD Protein RhsD Escherichia coli (strain K12)
P32109 4.8e-18 85 34 3 156 5 yibJ Putative uncharacterized protein YibJ Escherichia coli (strain K12)
P16916 7.19e-18 89 31 4 215 3 rhsA Protein RhsA Escherichia coli (strain K12)
P77779 6.24e-17 85 39 1 116 5 ybfO Putative uncharacterized protein YbfO Escherichia coli (strain K12)
P16918 1.84e-16 85 39 2 122 1 rhsC Protein RhsC Escherichia coli (strain K12)
P77759 2.53e-15 78 42 1 95 5 ylbH Putative uncharacterized protein YlbH Escherichia coli (strain K12)
Q9I0F4 4.17e-13 74 27 11 330 4 tse5 Toxin protein Tse5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q07833 2.27e-05 50 27 9 228 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
D4G3R4 2.85e-05 50 27 9 228 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
B6A881 3.49e-05 49 27 10 236 1 yenC1 Toxin subunit YenC1 Yersinia entomophaga
G4NYJ6 6.39e-05 48 27 9 228 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
B6A882 0.000537 45 44 2 61 1 yenC2 Toxin subunit YenC2 Yersinia entomophaga

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05455
Feature type CDS
Gene -
Product RHS repeat-associated core domain-containing protein
Location 1196255 - 1197397 (strand: 1)
Length 1143 (nucleotides) / 380 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3697
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF03527 RHS protein
PF05593 RHS Repeat

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3209 General function prediction only (R) R Uncharacterized conserved protein RhaS, contains 28 RHS repeats

Protein Sequence

MLQLFQQQQAGRVTRRYTAKGYQDYHYDVNGRLAKKIVHTRGFRPREWRYLWNTQNQLTACFTPKGDCWHYTYDAFGRRLSKTKTVDSDLAHIDPLFPQIKPKITTWRYLWSGDQLIEETPIYADGTLANAQQVQWLYQPGEITPTARYQQGKLHYVVTDHQGTPREIFCEGGQASWAGRLNTWGQMQFWRYRDGKAENDPNYTECPFRFAGQYEDEESGLYYNRFRYYDRETGQYLSPDPIGLLGGLNPYGYVHCPTGWVDPFGLACCPPPKIKATQIGLRNPKQIDGMKKDMLDGTFDFSLPKNQVGGFVDSNGIYYMGEGHHRMVAAQEIYKETGDAKYINKLIENGSWTRTNSPPTDARAMPSRSFFSNLRNKLGF

Flanking regions ( +/- flanking 50bp)

CTGTTTAGTTTAGCATATCGCTCCTTGTATATTCAAAACCACAAGGGGCGATGCTACAGCTATTTCAGCAACAGCAAGCAGGACGGGTGACTCGCCGTTACACAGCGAAGGGATATCAAGATTACCATTATGATGTTAATGGGCGATTAGCTAAAAAAATTGTCCATACACGCGGTTTTCGTCCCAGAGAGTGGCGCTATTTATGGAACACACAAAATCAGCTAACCGCATGCTTTACACCGAAAGGGGATTGTTGGCACTATACTTATGATGCTTTTGGTCGACGTCTGAGTAAAACCAAAACTGTCGACAGTGACTTAGCCCATATTGACCCATTATTTCCGCAGATTAAGCCTAAAATCACCACGTGGCGCTATTTATGGTCGGGAGACCAACTGATAGAAGAAACGCCGATATATGCCGATGGCACTCTTGCTAATGCGCAACAAGTTCAATGGCTGTATCAACCCGGAGAAATAACGCCCACCGCGCGTTATCAACAGGGCAAACTGCACTATGTGGTCACCGACCACCAAGGCACCCCGCGAGAGATATTCTGTGAAGGCGGACAAGCCAGTTGGGCAGGAAGGTTGAATACGTGGGGCCAAATGCAGTTTTGGCGTTACCGCGACGGTAAAGCGGAGAATGACCCTAATTATACCGAATGTCCTTTTCGCTTTGCGGGGCAATATGAAGATGAAGAAAGTGGCTTGTATTATAATCGCTTTCGCTATTATGATAGGGAAACAGGACAGTATCTTTCCCCAGACCCCATAGGGTTATTGGGTGGGCTGAATCCGTATGGGTATGTGCATTGTCCGACGGGGTGGGTTGATCCGTTTGGGCTGGCGTGTTGTCCACCACCAAAAATAAAAGCTACACAAATCGGATTAAGAAACCCTAAACAGATTGATGGTATGAAAAAAGATATGCTTGACGGCACTTTTGATTTTTCACTTCCCAAAAATCAAGTTGGTGGCTTTGTAGATTCCAATGGAATTTATTATATGGGGGAAGGGCATCATAGAATGGTTGCAGCTCAAGAAATATATAAAGAAACAGGCGATGCTAAATATATTAATAAATTAATAGAAAATGGTTCATGGACAAGAACAAATTCACCACCAACTGATGCCAGAGCTATGCCATCCAGAAGTTTCTTTAGTAATTTAAGAAACAAATTAGGATTTTAAGAATGAGAAAAATAAGTATATATTCAAATATGTTATGGAAGTCATTATCT