Homologs in group_3643

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4 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS06955 F4V73_RS06955 34.6 Morganella psychrotolerans - PAAR domain-containing protein
PMI_RS19585 PMI_RS19585 23.7 Proteus mirabilis HI4320 - RHS domain-containing protein
PMI_RS19600 PMI_RS19600 25.0 Proteus mirabilis HI4320 - hypothetical protein
PMI_RS05220 PMI_RS05220 31.6 Proteus mirabilis HI4320 - PAAR domain-containing protein

Distribution of the homologs in the orthogroup group_3643

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3643

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DUH5 2.3e-79 283 28 20 850 1 dddA Double-stranded DNA deaminase toxin A Burkholderia cenocepacia (strain H111)
P16917 9.82e-37 153 25 22 767 3 rhsB Protein RhsB Escherichia coli (strain K12)
P16918 1.04e-36 153 25 25 798 1 rhsC Protein RhsC Escherichia coli (strain K12)
P16916 1.07e-36 153 25 22 767 3 rhsA Protein RhsA Escherichia coli (strain K12)
P16919 2.38e-35 149 25 25 812 2 rhsD Protein RhsD Escherichia coli (strain K12)
Q9I0F4 1.7e-28 127 25 24 795 4 tse5 Toxin protein Tse5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I0F4 0.000876 47 23 17 496 4 tse5 Toxin protein Tse5 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
E0SGL7 9.2e-28 125 24 17 650 1 rhsC Putative deoxyribonuclease RhsC Dickeya dadantii (strain 3937)
E0SGL7 4.89e-12 73 22 25 737 1 rhsC Putative deoxyribonuclease RhsC Dickeya dadantii (strain 3937)
E0SGL7 3.37e-08 61 24 22 568 1 rhsC Putative deoxyribonuclease RhsC Dickeya dadantii (strain 3937)
E0SGL7 1.46e-07 59 24 15 445 1 rhsC Putative deoxyribonuclease RhsC Dickeya dadantii (strain 3937)
E0SIS2 8.74e-18 92 24 31 838 1 rhsB Probable deoxyribonuclease RhsB Dickeya dadantii (strain 3937)
E0SIS2 3.47e-13 77 24 20 549 1 rhsB Probable deoxyribonuclease RhsB Dickeya dadantii (strain 3937)
E0SAK8 2.37e-16 87 24 28 719 1 rhsA Probable deoxyribonuclease RhsA Dickeya dadantii (strain 3937)
E0SAK8 5.55e-16 86 22 30 832 1 rhsA Probable deoxyribonuclease RhsA Dickeya dadantii (strain 3937)
E0SAK8 1.74e-13 78 24 19 548 1 rhsA Probable deoxyribonuclease RhsA Dickeya dadantii (strain 3937)
D4G3R4 2.24e-11 72 22 18 536 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 1.38e-09 66 30 3 168 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 2.5e-09 65 20 21 542 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
D4G3R4 0.000172 49 24 17 324 1 wapA tRNA(Glu)-specific nuclease WapA Bacillus subtilis subsp. natto (strain BEST195)
Q07833 4.49e-11 70 22 20 537 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 1.2e-09 66 30 3 168 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 7.26e-09 63 20 22 543 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 3.57e-05 51 20 8 324 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
Q07833 9.61e-05 50 24 17 324 1 wapA tRNA nuclease WapA Bacillus subtilis (strain 168)
G4NYJ6 1.31e-10 69 21 18 536 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 4.7e-10 67 30 3 168 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 3.16e-09 64 20 21 514 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 1.58e-06 56 21 15 480 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
G4NYJ6 3.39e-05 51 25 17 324 1 wapA tRNA3(Ser)-specific nuclease WapA Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10)
P24211 5.62e-10 66 27 8 259 5 rhsE Putative protein RhsE Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03745
Feature type CDS
Gene -
Product RHS repeat protein
Location 843162 - 845711 (strand: 1)
Length 2550 (nucleotides) / 849 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3643
Orthogroup size 5
N. genomes 2

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Genomic region

Domains

PF05593 RHS Repeat

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3209 General function prediction only (R) R Uncharacterized conserved protein RhaS, contains 28 RHS repeats

Protein Sequence

MSGRRLALGKIALGQKVFYQDEGFTVYRTTNNLFLVESAEGDYQLFEANPHKINTLRLMKSADRHNNALHYRYANDGELVQIHDDAYLTDIRLHYDEITQRLQSVTRHQGQEEKTLVTYTYDAQQRLVQVTNADKRVTRRFGWDDESGLMAMHQYAAGVSSHYRWQRFDAFTIEDNEPEWRVVEHWLKDGKRCLEHTELTYDLAQRTLTTVETGGETTFRRWNEQQQIIEYTNALNETWWFEWDTSRLLTKAIAPDGSEWGYTYDERGNLTQSTDPEQQSTCYDWDKDFAFPTAQTLPNGAAWHWEYNEHGDIRRVIDPLGHITRLAWDDQGLCLGQVDAKGNETHYRYNARGQLIEQRDCSGYPTTLTYDDWGQLRSLTNAQNETTTYTFSEAGLLLTERLPDGTENRYDYDATGQLVGITDAGERHILLRRNRRGQVIARRDPAGHWLHFHYDTFGRMQALENEQGEQYRFEYDALHRLTDEHDLIGQQKHYQYDVMGNVTQIKTTPGPCVDTPIPLSPQVTTFGYDKVGRLLFRENADYRTEYLYQPLSVTLRRVPMAVWHEAERTGTTARVEYQDALTFTYDKVGQLVREASARGDYQHHYDVLGNITRTELPHQRAFEYLYYGSGHLQQTQWRDNEQLTVLAEYQRDRLHRETLRTSGALDNETGYDCRGRITHQVARQMNTSQFVTPVIDRRYRWDKRNQLIERSVSYGQTGEVFTAGHWYYHSYQYDPLGQLTAHLGSVQTEHFLYDAAANLLTRPHTEAPHNQVQGSDKFDYRYDGFGRMVSRYEKGSSSGQRYHYDSDHRIIAVDIDQRLLGYQRGEYRYDILGRRIENGYGKPVRLPIQ

Flanking regions ( +/- flanking 50bp)

GCAGTAGGGATCCACGTCCTTTAGGGCGTGGAGGATGTCAATATCATGACATGTCAGGGAGGCGTTTAGCGTTAGGAAAAATCGCCCTTGGACAGAAAGTGTTCTATCAAGATGAAGGCTTTACCGTCTATCGCACGACAAACAATCTTTTCCTTGTTGAATCGGCGGAAGGTGATTATCAACTTTTCGAAGCCAATCCACATAAAATCAATACACTGCGCTTAATGAAAAGTGCTGATCGTCATAATAACGCTTTACACTACCGCTATGCTAATGACGGTGAATTGGTACAAATTCATGATGATGCGTATCTGACCGATATCCGGTTACATTATGATGAAATCACCCAACGCTTACAGTCGGTGACCCGCCACCAAGGACAAGAAGAAAAAACGCTGGTCACTTATACTTATGATGCACAACAGCGTTTAGTGCAAGTCACTAATGCGGATAAGCGAGTGACTCGTCGTTTTGGCTGGGATGATGAATCGGGTTTAATGGCCATGCACCAATATGCCGCAGGGGTCAGTAGTCATTATCGGTGGCAACGTTTTGATGCCTTTACCATTGAAGACAATGAACCTGAGTGGCGAGTGGTTGAGCACTGGCTTAAAGACGGTAAACGCTGTTTAGAGCATACCGAACTGACGTATGATTTAGCTCAACGAACCCTCACCACCGTGGAAACGGGGGGCGAAACCACCTTCCGTCGCTGGAATGAACAACAGCAAATTATCGAATACACCAATGCATTGAATGAAACGTGGTGGTTTGAATGGGATACCAGCCGCTTATTAACGAAAGCAATAGCCCCAGATGGCAGTGAATGGGGGTATACCTATGATGAGCGCGGTAATTTAACCCAATCGACCGATCCCGAACAACAATCGACTTGCTATGATTGGGACAAAGATTTTGCGTTTCCCACGGCACAAACTTTGCCAAATGGGGCGGCTTGGCATTGGGAGTACAATGAGCACGGCGATATTCGTCGTGTGATTGACCCGCTTGGCCATATCACGCGCTTGGCGTGGGATGACCAAGGCCTGTGTCTGGGGCAAGTGGATGCTAAGGGTAATGAAACCCACTATCGCTATAATGCCCGCGGTCAGTTAATCGAGCAACGGGACTGTTCGGGTTACCCCACCACCTTGACCTACGATGATTGGGGACAACTGCGCTCGTTGACCAATGCACAGAATGAAACCACGACTTACACCTTTAGTGAAGCGGGGTTGTTGTTAACAGAGCGCTTACCGGATGGGACAGAAAACCGTTATGACTATGATGCCACCGGGCAATTAGTGGGAATAACGGATGCCGGAGAGCGCCATATTCTGTTGCGCCGTAACCGTCGTGGGCAAGTGATAGCCCGACGCGATCCGGCAGGGCATTGGTTGCATTTTCACTATGATACTTTCGGGCGTATGCAGGCGCTGGAGAATGAACAGGGCGAGCAGTACCGCTTTGAGTATGATGCCTTGCATCGTTTAACTGATGAACATGATCTTATCGGACAACAAAAGCACTATCAGTACGATGTGATGGGGAATGTCACCCAGATAAAAACCACCCCGGGGCCTTGCGTTGATACGCCGATACCCTTATCCCCGCAGGTGACCACTTTCGGTTACGATAAAGTGGGACGGTTGCTGTTTCGAGAAAACGCCGATTATCGCACGGAATACCTTTATCAACCTTTGAGTGTGACGTTACGCCGAGTCCCCATGGCGGTATGGCATGAAGCCGAACGCACCGGCACCACTGCCCGCGTAGAGTATCAAGACGCCCTGACCTTTACCTACGATAAAGTGGGGCAGTTGGTTCGAGAAGCCAGCGCCCGCGGTGATTATCAGCATCACTATGATGTGCTGGGTAATATCACTCGCACCGAGTTGCCCCATCAACGGGCATTTGAATACCTGTATTACGGCTCTGGGCATTTACAACAAACGCAATGGCGAGATAATGAGCAACTGACGGTATTGGCGGAATACCAACGAGACCGTTTACACCGAGAAACGTTGCGCACCAGTGGCGCCTTAGACAATGAAACGGGCTATGACTGTCGGGGACGTATTACGCACCAAGTGGCGCGCCAAATGAATACCTCACAGTTTGTGACCCCGGTGATAGACCGTCGTTACCGTTGGGATAAACGCAACCAACTTATCGAGCGCAGTGTCAGTTATGGTCAAACGGGCGAGGTTTTTACCGCCGGACATTGGTACTACCACAGTTATCAGTACGACCCACTGGGGCAGTTGACGGCGCATTTAGGGTCGGTGCAAACCGAACACTTTCTGTATGATGCGGCGGCCAATTTACTGACCCGTCCGCACACCGAAGCACCGCATAACCAAGTACAAGGTAGTGATAAATTTGATTATCGCTACGACGGTTTTGGTCGCATGGTCTCCCGCTATGAAAAAGGCAGTAGCTCGGGGCAACGCTATCACTATGACAGTGACCACCGTATTATCGCAGTGGATATCGACCAAAGGCTCTTAGGGTATCAGCGAGGGGAATACCGCTACGATATCTTAGGGCGCCGGATTGAAAACGGTTATGGAAAGCCAGTGCGATTGCCAATACAATGACCTATCACCAACATGAGCCGGATAAAGTGTACAAAAGGCTCTAGATGAGA