COG2885


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2885, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 18 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG2885 is associated with 18 different proteins (see tab "Protein list" and "Profile")
The 18 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_185 FBDBKF_07340 152157 153230 -1 ompA porin OmpA Morganella morganii S1
1 group_1505 FBDBKF_09735 43481 43975 -1 pal peptidoglycan-associated lipoprotein Pal Morganella morganii S1
2 group_185 FBDBKF_20375 57 575 -1 ompA OmpA family protein Morganella morganii S1
3 group_185 EHELCC_03630 32956 34029 1 ompA porin OmpA Morganella morganii S2
4 group_1505 EHELCC_04535 235446 235940 -1 pal peptidoglycan-associated lipoprotein Pal Morganella morganii S2
5 group_185 NLDBIP_03630 32752 33825 1 ompA porin OmpA Morganella morganii S4
6 group_1505 NLDBIP_04535 235242 235736 -1 pal peptidoglycan-associated lipoprotein Pal Morganella morganii S4
7 group_185 LHKJJB_09460 32866 33939 1 ompA porin OmpA Morganella morganii S3
8 group_1505 LHKJJB_14095 99642 100136 1 pal peptidoglycan-associated lipoprotein Pal Morganella morganii S3
9 group_185 HKOGLL_09515 157113 158186 -1 ompA porin OmpA Morganella morganii S5
10 group_1505 HKOGLL_12440 44262 44756 -1 pal peptidoglycan-associated lipoprotein Pal Morganella morganii S5
11 group_1505 F4V73_RS00605 128634 129128 1 pal peptidoglycan-associated lipoprotein Pal Morganella psychrotolerans
12 group_185 F4V73_RS01525 340580 341659 -1 ompA porin OmpA Morganella psychrotolerans
13 group_61 F4V73_RS09425 1987257 1988891 1 OmpA family protein Morganella psychrotolerans
14 group_61 F4V73_RS16850 198041 199759 -1 OmpA family protein Morganella psychrotolerans
15 group_185 F4V73_RS19125 2999 3532 1 OmpA family protein Morganella psychrotolerans
16 group_1505 PMI_RS02875 631909 632406 1 pal peptidoglycan-associated lipoprotein Pal Proteus mirabilis HI4320
17 group_185 PMI_RS03855 873336 874424 -1 ompA porin OmpA Proteus mirabilis HI4320