Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG2310
Protein list: lists the 21 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.
Description
| Description | Stress response protein SCP2 |
|---|---|
| Function(s) descr. | Signal transduction mechanisms (T) |
Occurence in the database
| COG2310 is associated with 21 different proteins |
| The 21 proteins are classified into 3 different orthogroup(s) |
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_485 | FBDBKF_13840 | 63386 | 63961 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S1 |
| 1 | group_484 | FBDBKF_13845 | 64022 | 64600 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S1 |
| 2 | group_1892 | FBDBKF_13865 | 67332 | 67919 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S1 |
| 3 | group_485 | EHELCC_11510 | 148262 | 148837 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S2 |
| 4 | group_484 | EHELCC_11515 | 148898 | 149476 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S2 |
| 5 | group_1892 | EHELCC_11535 | 152208 | 152795 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S2 |
| 6 | group_485 | NLDBIP_11855 | 148262 | 148837 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S4 |
| 7 | group_484 | NLDBIP_11860 | 148898 | 149476 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S4 |
| 8 | group_1892 | NLDBIP_11880 | 152208 | 152795 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S4 |
| 9 | group_485 | LHKJJB_11715 | 148262 | 148837 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S3 |
| 10 | group_484 | LHKJJB_11720 | 148898 | 149476 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S3 |
| 11 | group_1892 | LHKJJB_11740 | 152208 | 152795 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S3 |
| 12 | group_485 | HKOGLL_10325 | 148262 | 148837 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S5 |
| 13 | group_484 | HKOGLL_10330 | 148898 | 149476 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S5 |
| 14 | group_1892 | HKOGLL_10350 | 152208 | 152795 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S5 |
| 15 | group_485 | F4V73_RS12705 | 141925 | 142500 | -1 | TerD family protein | Morganella psychrotolerans | |
| 16 | group_484 | F4V73_RS12710 | 142633 | 143211 | -1 | TerD family protein | Morganella psychrotolerans | |
| 17 | group_1892 | F4V73_RS12730 | 145953 | 146540 | -1 | TerD family protein | Morganella psychrotolerans | |
| 18 | group_485 | PMI_RS11790 | 2607748 | 2608323 | -1 | TerD family protein | Proteus mirabilis HI4320 | |
| 19 | group_484 | PMI_RS11795 | 2608400 | 2608978 | -1 | terD | tellurium resistance membrane protein TerD | Proteus mirabilis HI4320 |
| 20 | group_1892 | PMI_RS11815 | 2611729 | 2612313 | -1 | tellurium resistance-associated protein TerZ | Proteus mirabilis HI4320 |
