COG2310
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2310, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Stress response protein SCP2 |
---|---|
Function(s) descr. | Signal transduction mechanisms (T) |
Occurence in the database
COG2310 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_54 | FBDBKF_13840 | 63386 | 63961 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S1 |
1 | group_54 | FBDBKF_13845 | 64022 | 64600 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S1 |
2 | group_1854 | FBDBKF_13865 | 67332 | 67919 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S1 |
3 | group_54 | EHELCC_11510 | 148262 | 148837 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S2 |
4 | group_54 | EHELCC_11515 | 148898 | 149476 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S2 |
5 | group_1854 | EHELCC_11535 | 152208 | 152795 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S2 |
6 | group_54 | NLDBIP_11855 | 148262 | 148837 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S4 |
7 | group_54 | NLDBIP_11860 | 148898 | 149476 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S4 |
8 | group_1854 | NLDBIP_11880 | 152208 | 152795 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S4 |
9 | group_54 | LHKJJB_11715 | 148262 | 148837 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S3 |
10 | group_54 | LHKJJB_11720 | 148898 | 149476 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S3 |
11 | group_1854 | LHKJJB_11740 | 152208 | 152795 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S3 |
12 | group_54 | HKOGLL_10325 | 148262 | 148837 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S5 |
13 | group_54 | HKOGLL_10330 | 148898 | 149476 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S5 |
14 | group_1854 | HKOGLL_10350 | 152208 | 152795 | -1 | terZ | Stress response protein SCP2 | Morganella morganii S5 |
15 | group_54 | F4V73_RS12705 | 141925 | 142500 | -1 | TerD family protein | Morganella psychrotolerans | |
16 | group_54 | F4V73_RS12710 | 142633 | 143211 | -1 | TerD family protein | Morganella psychrotolerans | |
17 | group_1854 | F4V73_RS12730 | 145953 | 146540 | -1 | TerD family protein | Morganella psychrotolerans | |
18 | group_54 | PMI_RS11790 | 2607748 | 2608323 | -1 | TerD family protein | Proteus mirabilis HI4320 | |
19 | group_54 | PMI_RS11795 | 2608400 | 2608978 | -1 | terD | tellurium resistance membrane protein TerD | Proteus mirabilis HI4320 |
20 | group_1854 | PMI_RS11815 | 2611729 | 2612313 | -1 | tellurium resistance-associated protein TerZ | Proteus mirabilis HI4320 |