COG2310


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2310, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Stress response protein SCP2
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG2310 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_54 FBDBKF_13840 63386 63961 -1 terZ Stress response protein SCP2 Morganella morganii S1
1 group_54 FBDBKF_13845 64022 64600 -1 terZ Stress response protein SCP2 Morganella morganii S1
2 group_1854 FBDBKF_13865 67332 67919 -1 terZ Stress response protein SCP2 Morganella morganii S1
3 group_54 EHELCC_11510 148262 148837 -1 terZ Stress response protein SCP2 Morganella morganii S2
4 group_54 EHELCC_11515 148898 149476 -1 terZ Stress response protein SCP2 Morganella morganii S2
5 group_1854 EHELCC_11535 152208 152795 -1 terZ Stress response protein SCP2 Morganella morganii S2
6 group_54 NLDBIP_11855 148262 148837 -1 terZ Stress response protein SCP2 Morganella morganii S4
7 group_54 NLDBIP_11860 148898 149476 -1 terZ Stress response protein SCP2 Morganella morganii S4
8 group_1854 NLDBIP_11880 152208 152795 -1 terZ Stress response protein SCP2 Morganella morganii S4
9 group_54 LHKJJB_11715 148262 148837 -1 terZ Stress response protein SCP2 Morganella morganii S3
10 group_54 LHKJJB_11720 148898 149476 -1 terZ Stress response protein SCP2 Morganella morganii S3
11 group_1854 LHKJJB_11740 152208 152795 -1 terZ Stress response protein SCP2 Morganella morganii S3
12 group_54 HKOGLL_10325 148262 148837 -1 terZ Stress response protein SCP2 Morganella morganii S5
13 group_54 HKOGLL_10330 148898 149476 -1 terZ Stress response protein SCP2 Morganella morganii S5
14 group_1854 HKOGLL_10350 152208 152795 -1 terZ Stress response protein SCP2 Morganella morganii S5
15 group_54 F4V73_RS12705 141925 142500 -1 TerD family protein Morganella psychrotolerans
16 group_54 F4V73_RS12710 142633 143211 -1 TerD family protein Morganella psychrotolerans
17 group_1854 F4V73_RS12730 145953 146540 -1 TerD family protein Morganella psychrotolerans
18 group_54 PMI_RS11790 2607748 2608323 -1 TerD family protein Proteus mirabilis HI4320
19 group_54 PMI_RS11795 2608400 2608978 -1 terD tellurium resistance membrane protein TerD Proteus mirabilis HI4320
20 group_1854 PMI_RS11815 2611729 2612313 -1 tellurium resistance-associated protein TerZ Proteus mirabilis HI4320