COG2197


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2197, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 29 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains
Function(s) descr. Signal transduction mechanisms (T)
Transcription (K)

Occurence in the database

COG2197 is associated with 29 different proteins (see tab "Protein list" and "Profile")
The 29 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_433 FBDBKF_00380 50491 51183 1 rcsB response regulator transcription factor RcsB Morganella morganii S1
1 group_1475 FBDBKF_09505 143207 143908 -1 narL two-component system response regulator NarL Morganella morganii S1
2 group_1823 FBDBKF_13510 80729 81358 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
3 group_2094 FBDBKF_15760 3794 4453 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S1
4 group_433 EHELCC_01165 257685 258377 -1 rcsB response regulator transcription factor RcsB Morganella morganii S2
5 group_1823 EHELCC_08585 193833 194462 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
6 group_1475 EHELCC_09905 2196 2897 1 narL two-component system response regulator NarL Morganella morganii S2
7 group_2094 EHELCC_17675 37723 38382 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S2
8 group_433 NLDBIP_02295 421759 422451 1 rcsB response regulator transcription factor RcsB Morganella morganii S4
9 group_1823 NLDBIP_08910 193833 194462 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
10 group_1475 NLDBIP_19225 2194 2895 1 narL two-component system response regulator NarL Morganella morganii S4
11 group_2094 NLDBIP_19345 13668 14327 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S4
12 group_433 LHKJJB_03810 29000 29692 1 rcsB response regulator transcription factor RcsB Morganella morganii S3
13 group_1823 LHKJJB_05355 62697 63326 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
14 group_2094 LHKJJB_18115 37723 38382 1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S3
15 group_1475 LHKJJB_19145 19174 19875 -1 narL two-component system response regulator NarL Morganella morganii S3
16 group_433 HKOGLL_03235 257890 258582 -1 rcsB response regulator transcription factor RcsB Morganella morganii S5
17 group_1823 HKOGLL_05560 178424 179053 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
18 group_1475 HKOGLL_18925 19174 19875 -1 narL two-component system response regulator NarL Morganella morganii S5
19 group_2094 HKOGLL_18965 3672 4331 -1 citB DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains Morganella morganii S5
20 group_1823 F4V73_RS03250 692620 693249 -1 LuxR C-terminal-related transcriptional regulator Morganella psychrotolerans
21 group_433 F4V73_RS06360 1322715 1323365 1 rcsB response regulator transcription factor RcsB Morganella psychrotolerans
22 group_2094 F4V73_RS07930 1652553 1653263 -1 response regulator Morganella psychrotolerans
23 group_1475 F4V73_RS10465 210742 211455 1 narL two-component system response regulator NarL Morganella psychrotolerans
24 group_2094 PMI_RS07405 1616486 1617049 -1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320
25 group_1823 PMI_RS07560 1652173 1652796 1 response regulator Proteus mirabilis HI4320
26 group_4477 PMI_RS08220 1794321 1794923 1 LuxR C-terminal-related transcriptional regulator Proteus mirabilis HI4320
27 group_433 PMI_RS08490 1847715 1848371 1 rcsB response regulator transcription factor RcsB Proteus mirabilis HI4320
28 group_1475 PMI_RS17750 3895035 3895697 -1 narL two-component system response regulator NarL Proteus mirabilis HI4320