COG2197
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2197, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 29 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains |
---|---|
Function(s) descr. | Signal transduction mechanisms (T) Transcription (K) |
Occurence in the database
COG2197 is associated with 29 different proteins (see tab "Protein list" and "Profile") |
The 29 proteins are classified into 5 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_433 | FBDBKF_00380 | 50491 | 51183 | 1 | rcsB | response regulator transcription factor RcsB | Morganella morganii S1 |
1 | group_1475 | FBDBKF_09505 | 143207 | 143908 | -1 | narL | two-component system response regulator NarL | Morganella morganii S1 |
2 | group_1823 | FBDBKF_13510 | 80729 | 81358 | 1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S1 |
3 | group_2094 | FBDBKF_15760 | 3794 | 4453 | 1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S1 |
4 | group_433 | EHELCC_01165 | 257685 | 258377 | -1 | rcsB | response regulator transcription factor RcsB | Morganella morganii S2 |
5 | group_1823 | EHELCC_08585 | 193833 | 194462 | -1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S2 |
6 | group_1475 | EHELCC_09905 | 2196 | 2897 | 1 | narL | two-component system response regulator NarL | Morganella morganii S2 |
7 | group_2094 | EHELCC_17675 | 37723 | 38382 | 1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S2 |
8 | group_433 | NLDBIP_02295 | 421759 | 422451 | 1 | rcsB | response regulator transcription factor RcsB | Morganella morganii S4 |
9 | group_1823 | NLDBIP_08910 | 193833 | 194462 | -1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S4 |
10 | group_1475 | NLDBIP_19225 | 2194 | 2895 | 1 | narL | two-component system response regulator NarL | Morganella morganii S4 |
11 | group_2094 | NLDBIP_19345 | 13668 | 14327 | 1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S4 |
12 | group_433 | LHKJJB_03810 | 29000 | 29692 | 1 | rcsB | response regulator transcription factor RcsB | Morganella morganii S3 |
13 | group_1823 | LHKJJB_05355 | 62697 | 63326 | 1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S3 |
14 | group_2094 | LHKJJB_18115 | 37723 | 38382 | 1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S3 |
15 | group_1475 | LHKJJB_19145 | 19174 | 19875 | -1 | narL | two-component system response regulator NarL | Morganella morganii S3 |
16 | group_433 | HKOGLL_03235 | 257890 | 258582 | -1 | rcsB | response regulator transcription factor RcsB | Morganella morganii S5 |
17 | group_1823 | HKOGLL_05560 | 178424 | 179053 | -1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S5 |
18 | group_1475 | HKOGLL_18925 | 19174 | 19875 | -1 | narL | two-component system response regulator NarL | Morganella morganii S5 |
19 | group_2094 | HKOGLL_18965 | 3672 | 4331 | -1 | citB | DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains | Morganella morganii S5 |
20 | group_1823 | F4V73_RS03250 | 692620 | 693249 | -1 | LuxR C-terminal-related transcriptional regulator | Morganella psychrotolerans | |
21 | group_433 | F4V73_RS06360 | 1322715 | 1323365 | 1 | rcsB | response regulator transcription factor RcsB | Morganella psychrotolerans |
22 | group_2094 | F4V73_RS07930 | 1652553 | 1653263 | -1 | response regulator | Morganella psychrotolerans | |
23 | group_1475 | F4V73_RS10465 | 210742 | 211455 | 1 | narL | two-component system response regulator NarL | Morganella psychrotolerans |
24 | group_2094 | PMI_RS07405 | 1616486 | 1617049 | -1 | LuxR C-terminal-related transcriptional regulator | Proteus mirabilis HI4320 | |
25 | group_1823 | PMI_RS07560 | 1652173 | 1652796 | 1 | response regulator | Proteus mirabilis HI4320 | |
26 | group_4477 | PMI_RS08220 | 1794321 | 1794923 | 1 | LuxR C-terminal-related transcriptional regulator | Proteus mirabilis HI4320 | |
27 | group_433 | PMI_RS08490 | 1847715 | 1848371 | 1 | rcsB | response regulator transcription factor RcsB | Proteus mirabilis HI4320 |
28 | group_1475 | PMI_RS17750 | 3895035 | 3895697 | -1 | narL | two-component system response regulator NarL | Proteus mirabilis HI4320 |