COG1032


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1032, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Radical SAM superfamily enzyme YgiQ, UPF0313 family
Function(s) descr. General function prediction only (R)

Occurence in the database

COG1032 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3660 FBDBKF_12555 25973 27346 1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family Morganella morganii S1
1 group_2899 FBDBKF_12575 29673 31016 -1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family Morganella morganii S1
2 group_2899 FBDBKF_12580 31013 32323 -1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family Morganella morganii S1
3 group_2899 FBDBKF_12590 33345 34691 -1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family Morganella morganii S1
4 group_3660 FBDBKF_12595 34691 36085 -1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family Morganella morganii S1
5 group_3660 F4V73_RS07790 1625894 1627240 1 radical SAM protein Morganella psychrotolerans
6 group_2899 F4V73_RS07810 1629585 1630928 -1 radical SAM protein Morganella psychrotolerans
7 group_2899 F4V73_RS07815 1630925 1632256 -1 radical SAM protein Morganella psychrotolerans
8 group_2899 F4V73_RS07825 1633257 1634603 -1 radical SAM protein Morganella psychrotolerans
9 group_3660 F4V73_RS07830 1634603 1635997 -1 radical SAM protein Morganella psychrotolerans