Homologs in group_2899

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5 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12575 FBDBKF_12575 43.0 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12580 FBDBKF_12580 42.1 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12590 FBDBKF_12590 92.4 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07810 F4V73_RS07810 42.8 Morganella psychrotolerans - radical SAM protein
F4V73_RS07815 F4V73_RS07815 42.4 Morganella psychrotolerans - radical SAM protein

Distribution of the homologs in the orthogroup group_2899

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2899

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8KCU0 9.86e-55 191 30 9 404 1 bchR Bacteriochlorophyllide d C-12(1)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q55914 7.19e-54 190 30 4 385 3 slr0309 Uncharacterized methyltransferase slr0309 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8KBK9 1.43e-49 177 27 6 401 1 bchQ Bacteriochlorophyllide d C-8(2)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
O58549 2.48e-25 111 26 14 383 3 PH0819 Uncharacterized methyltransferase PH0819 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P42349 4.75e-25 111 25 8 348 4 sll1242 Uncharacterized methyltransferase sll1242 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
B3QHD1 2.86e-24 108 24 11 365 1 hpnP Hopanoid C-2 methylase Rhodopseudomonas palustris (strain TIE-1)
Q9RFD3 1.66e-22 103 24 21 503 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
P26168 1.66e-21 100 23 16 459 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q7X2C7 4.56e-19 93 24 17 453 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rubrivivax gelatinosus
Q55373 1.2e-09 63 26 9 234 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q58275 1.4e-09 63 24 10 318 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q56184 1.6e-09 63 27 4 154 1 fom3 Cytidylyl-2-hydroxyethylphosphonate methyltransferase Streptomyces wedmorensis
Q60AV6 9.79e-06 51 23 5 192 1 hpnR Hopanoid C-3 methylase Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Q1IYM0 6.83e-05 48 24 8 206 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Deinococcus geothermalis (strain DSM 11300 / CIP 105573 / AG-3a)
Q8F743 0.000103 48 23 8 180 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
Q72PA4 0.000103 48 23 8 180 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
B0K9N5 0.000124 47 23 11 240 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E)
Q053R5 0.000158 47 23 8 173 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)
Q04UA3 0.000158 47 23 8 173 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)
B0K1C1 0.000162 47 23 11 240 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Thermoanaerobacter sp. (strain X514)
A6LEM6 0.000226 47 22 9 277 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)
Q47RT4 0.000259 47 24 8 181 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Thermobifida fusca (strain YX)
A6LAJ6 0.000338 46 24 12 269 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)
Q9RV79 0.000428 46 22 6 198 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07825
Feature type CDS
Gene -
Product radical SAM protein
Location 1633257 - 1634603 (strand: -1)
Length 1347 (nucleotides) / 448 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2899
Orthogroup size 6
N. genomes 2

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Genomic region

Domains

PF04055 Radical SAM superfamily

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1032 General function prediction only (R) R Radical SAM superfamily enzyme YgiQ, UPF0313 family

Protein Sequence

MRLTFIHPAIGHRRGEAYLRSWQMEPLPVATLKGLTPADIDTRFYDDRLETIPFDEPTDLVSISVETYTAKRAYQIASEYRKRGVPVLMGGFHATLVPEEVKRFADTIVTGEAESVWETLIDDWRHGTLQREYHGEQTDLRGVRVDRSLFAGKRYLPIGLIETGRGCRFHCEFCAVQAFYQQRYRRRDPDHVLRELAELKGTKNLFFFVDDNFAGSLRESGDVLPELAKAGVRWVTQMSIDAAHDEEFVRALSQAGCRGVLIGFESLNEANLRQMKKGFNTMKGGFSQALANLRRHSIAVYGTFVFGYDHDTPDSFGEAVAYAREQSMYIAAFNHMTPFPGTPLYERLAQEKRLRYEQWWLDDNYRYNELPFYPAQLSPEAVTQGCLSARKAFYSSRSIFQRSWRNRGDFFMFRNYFPINWLHHREISSRNGYPLGDENWQGKLSEVK

Flanking regions ( +/- flanking 50bp)

ACCTGTGACTGGCCGATTGAGCATCATCCGGCAAAGTCGGGTAACAACTGATGCGGCTGACCTTTATTCATCCGGCGATTGGTCACCGGCGCGGTGAGGCGTATCTGCGCTCCTGGCAGATGGAGCCGTTGCCGGTGGCAACACTGAAAGGGTTGACCCCGGCGGATATCGATACCCGTTTTTATGATGATCGCCTGGAGACAATCCCGTTTGATGAGCCAACGGATTTAGTCTCCATTTCGGTGGAAACCTACACAGCGAAACGTGCGTATCAGATTGCAAGCGAGTACAGAAAGCGCGGGGTACCTGTGCTGATGGGCGGTTTTCATGCCACGCTGGTGCCGGAAGAGGTAAAACGTTTTGCCGATACGATTGTTACCGGTGAGGCGGAATCTGTCTGGGAAACACTGATTGATGACTGGCGCCACGGTACGTTGCAGCGGGAATACCACGGGGAACAGACAGATCTCCGGGGTGTTCGTGTTGATCGCAGCTTATTTGCAGGCAAGCGCTATCTGCCGATAGGGCTGATAGAAACCGGGCGCGGCTGCCGTTTTCACTGTGAATTCTGCGCGGTTCAGGCATTTTATCAGCAGCGTTACCGGCGGCGTGATCCTGACCATGTCCTGCGGGAGCTGGCTGAGCTGAAAGGTACAAAAAATCTGTTTTTCTTTGTGGATGATAATTTCGCGGGCAGCCTGAGGGAAAGTGGTGATGTCTTACCGGAACTGGCAAAAGCCGGTGTCCGCTGGGTGACTCAGATGAGTATTGATGCCGCCCATGATGAAGAATTTGTCCGCGCGCTGTCACAGGCGGGCTGCCGTGGTGTTTTGATTGGGTTTGAATCCCTGAATGAAGCCAATTTACGGCAGATGAAAAAAGGCTTTAATACTATGAAAGGCGGCTTCAGTCAGGCGCTGGCAAATTTGCGCCGTCATAGTATTGCAGTCTACGGCACCTTTGTGTTCGGCTATGATCATGATACGCCGGACTCTTTTGGTGAAGCCGTGGCTTATGCCCGGGAGCAGAGTATGTATATCGCGGCGTTTAATCATATGACGCCGTTTCCGGGCACACCGCTTTATGAACGACTGGCGCAGGAAAAACGCCTGCGTTATGAACAGTGGTGGCTTGATGATAACTATCGTTATAACGAGCTGCCGTTTTATCCGGCACAACTGTCTCCTGAGGCAGTCACGCAGGGATGCCTCTCGGCACGGAAGGCATTTTATAGTTCACGATCGATTTTTCAGCGCAGCTGGCGTAACCGGGGTGATTTTTTTATGTTTCGCAATTACTTCCCGATTAACTGGCTGCATCACCGCGAAATAAGCAGCCGTAACGGCTATCCGCTTGGTGATGAAAATTGGCAAGGTAAATTATCAGAGGTGAAATGATAGAGGTCATTGACGCGACAACGGAGCATATCGCAGAGTTACTCGGGCTC