Homologs in group_3660

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12555 FBDBKF_12555 40.8 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12595 FBDBKF_12595 94.4 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07790 F4V73_RS07790 41.1 Morganella psychrotolerans - radical SAM protein

Distribution of the homologs in the orthogroup group_3660

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3660

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q55914 1.25e-65 221 32 7 386 3 slr0309 Uncharacterized methyltransferase slr0309 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8KCU0 6.45e-60 206 32 6 388 1 bchR Bacteriochlorophyllide d C-12(1)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q8KBK9 2.61e-35 139 26 12 420 1 bchQ Bacteriochlorophyllide d C-8(2)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
B3QHD1 2.28e-23 106 26 8 376 1 hpnP Hopanoid C-2 methylase Rhodopseudomonas palustris (strain TIE-1)
O58549 2.96e-22 102 24 11 378 3 PH0819 Uncharacterized methyltransferase PH0819 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P42349 8.08e-18 89 23 9 371 4 sll1242 Uncharacterized methyltransferase sll1242 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9RFD3 1.07e-17 89 22 13 422 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
P26168 1.4e-15 82 24 16 412 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q60AV6 1.42e-10 67 24 16 391 1 hpnR Hopanoid C-3 methylase Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Q56184 1.52e-10 67 22 5 262 1 fom3 Cytidylyl-2-hydroxyethylphosphonate methyltransferase Streptomyces wedmorensis
Q58882 8.02e-10 64 23 13 343 3 MJ1487 Uncharacterized methyltransferase MJ1487 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58275 1.86e-09 63 22 14 353 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q48DN8 6.4e-07 55 27 11 232 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
Q4ZN97 7.12e-07 55 27 11 232 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas syringae pv. syringae (strain B728a)
Q475N7 3.57e-06 52 25 10 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q8Y206 5.04e-06 52 26 8 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q87VY1 6.18e-06 52 26 11 232 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Q83DX3 7.07e-06 52 25 14 292 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
A9NC58 7.07e-06 52 25 14 292 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain RSA 331 / Henzerling II)
B6J1A4 7.07e-06 52 25 14 292 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain CbuG_Q212)
B6J853 7.07e-06 52 25 14 292 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain CbuK_Q154)
A9KCP2 7.65e-06 52 25 14 292 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Coxiella burnetii (strain Dugway 5J108-111)
B2AHA4 8.66e-06 51 25 10 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1)
Q1LR87 8.66e-06 51 26 11 226 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)
Q3K6B7 8.93e-06 51 26 11 232 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas fluorescens (strain Pf0-1)
Q7X2C7 9.75e-06 51 21 12 381 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rubrivivax gelatinosus
Q3IK75 1.3e-05 51 24 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudoalteromonas translucida (strain TAC 125)
B1L8F3 1.32e-05 51 26 8 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermotoga sp. (strain RQ2)
A5IJD4 1.32e-05 51 26 8 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermotoga petrophila (strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)
Q7MN00 1.61e-05 50 25 12 288 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio vulnificus (strain YJ016)
Q9RV79 2.12e-05 50 23 8 213 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q4K5I3 2.94e-05 50 26 11 232 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
B1XYX5 3.09e-05 50 24 9 226 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6)
Q0KE93 3.46e-05 49 24 10 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
Q8DFE8 4.22e-05 49 25 12 288 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio vulnificus (strain CMCP6)
Q3JEH9 5.38e-05 49 25 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107)
Q55373 8.22e-05 48 22 5 220 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
B2UFP3 8.73e-05 48 26 8 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Ralstonia pickettii (strain 12J)
Q72J39 0.000109 48 21 8 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q5SME9 0.000111 48 21 8 202 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
A1WIL9 0.000117 48 23 15 331 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Verminephrobacter eiseniae (strain EF01-2)
A1VSP2 0.000135 47 23 9 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Polaromonas naphthalenivorans (strain CJ2)
Q15TR4 0.000197 47 23 9 264 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Q1QV24 0.0002 47 24 13 295 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
A2SD55 0.000215 47 25 10 228 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Methylibium petroleiphilum (strain ATCC BAA-1232 / LMG 22953 / PM1)
Q87RP4 0.000233 47 24 9 243 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A1K3J0 0.000253 47 24 9 225 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Azoarcus sp. (strain BH72)
Q7NQI8 0.000305 46 24 9 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
Q51470 0.000317 46 25 9 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02SE8 0.000317 46 25 9 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas aeruginosa (strain UCBPP-PA14)
A7N1G9 0.000325 46 24 13 291 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio campbellii (strain ATCC BAA-1116)
B6EIN8 0.000334 46 24 10 247 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Aliivibrio salmonicida (strain LFI1238)
B5BCD1 0.000438 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella paratyphi A (strain AKU_12601)
Q5PLT0 0.000438 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q9RCI2 0.000449 46 23 8 224 1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z8G5 0.000449 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella typhi
B4TPZ0 0.000449 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella schwarzengrund (strain CVM19633)
A9MUH8 0.000449 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SYN0 0.000449 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella newport (strain SL254)
B4TB74 0.000449 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella heidelberg (strain SL476)
B5FNB2 0.000449 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella dublin (strain CT_02021853)
Q57RQ7 0.000449 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella choleraesuis (strain SC-B67)
B5EZB2 0.000449 46 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Salmonella agona (strain SL483)
Q2KWE0 0.000508 46 23 9 237 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Bordetella avium (strain 197N)
A9KMU9 0.000523 46 23 12 247 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Lachnoclostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
Q5NRF3 0.00053 45 23 13 315 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q9WZC1 0.000533 45 24 8 197 1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
A4G267 0.000574 45 23 8 258 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Herminiimonas arsenicoxydans
Q0AF59 0.000663 45 24 8 222 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitrosomonas eutropha (strain DSM 101675 / C91 / Nm57)
B0UUU9 0.000689 45 23 9 226 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Histophilus somni (strain 2336)
Q0I3Z1 0.000689 45 23 9 226 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Histophilus somni (strain 129Pt)
B5XZQ0 0.000701 45 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Klebsiella pneumoniae (strain 342)
Q1REQ5 0.000713 45 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli (strain UTI89 / UPEC)
A1A8S9 0.000713 45 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O1:K1 / APEC
B7MFS7 0.000713 45 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O45:K1 (strain S88 / ExPEC)
Q5P760 0.000713 45 23 8 224 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Aromatoleum aromaticum (strain DSM 19018 / LMG 30748 / EbN1)
Q3Z6Q4 0.000717 45 23 7 199 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Dehalococcoides mccartyi (strain ATCC BAA-2266 / KCTC 15142 / 195)
A9BUQ1 0.000876 45 23 9 250 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Delftia acidovorans (strain DSM 14801 / SPH-1)
Q12EH0 0.000897 45 23 9 223 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Polaromonas sp. (strain JS666 / ATCC BAA-500)
A4XYW1 0.001 45 24 9 227 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas mendocina (strain ymp)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07830
Feature type CDS
Gene -
Product radical SAM protein
Location 1634603 - 1635997 (strand: -1)
Length 1395 (nucleotides) / 464 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3660
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF02310 B12 binding domain
PF04055 Radical SAM superfamily

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1032 General function prediction only (R) R Radical SAM superfamily enzyme YgiQ, UPF0313 family

Protein Sequence

MTQTMYSPQRPLDLVLLSPKGPLYRKRGGIFKRSLRYQPLTLTTLAALVPKSLPVTIRLIDESIEELPDDFTADLVVMTVITGNAPRAYDLTAQFRAKKIPVVLGGPHVTLLPQEALQHADTVCIGYSEQSWPQLIRDFMDGAMQREYRQSADFTLDIPDLPFPERERFDAKHFLTQGVFEATRSCAHNCEFCVAPSAWGRKQFQHPVEWVTEDIRRYVERTGKRKVIFVDLNLVSDIGYAKRLFTALIPLNIQWFGLSTVLIAHNHELMELMARSGCKGLLLGLETVSDGSLKDAGKKFNGSVDYKELIGDLHRLKIAIQGCFVFGLDHDTTDVFDRTVDLAIDAGIDLPRFSVLTPFPGTPLFKRLEEEQRILTTDWSLYDAQHVVFRPALMSARDLELGHERAWKKVYRYSSIARRLWQARNFKPLALTANLGYRFYAHHLHQYYTCDWPIEHHPAKSGNN

Flanking regions ( +/- flanking 50bp)

CTGACAACACCGGATTGGCGGACCATGTTTGACCTCAGGGAGTTTCCGTGATGACACAGACTATGTATTCGCCACAGCGTCCGCTTGATCTGGTGCTGCTTTCGCCTAAAGGACCGCTGTACCGCAAGCGGGGCGGAATTTTCAAACGTTCTCTGCGTTATCAGCCGCTGACGCTGACGACTCTCGCGGCATTAGTGCCGAAATCTCTGCCGGTGACTATCCGGCTGATTGATGAAAGTATTGAAGAGTTGCCGGACGATTTCACCGCCGATCTTGTTGTGATGACGGTGATCACCGGAAATGCGCCACGCGCTTATGATCTGACCGCGCAGTTCCGGGCAAAAAAGATCCCCGTAGTGCTCGGCGGACCGCATGTGACATTGCTGCCGCAGGAAGCATTACAGCACGCCGATACTGTCTGTATCGGCTATTCAGAGCAGAGCTGGCCGCAGCTTATCCGTGATTTTATGGATGGCGCGATGCAGCGGGAATACCGGCAGAGTGCGGATTTCACACTTGATATACCTGATTTGCCATTTCCTGAGCGCGAGCGTTTTGATGCGAAGCATTTTCTCACTCAGGGGGTATTTGAAGCCACACGTTCCTGTGCGCATAACTGTGAATTTTGTGTCGCGCCGAGTGCCTGGGGACGTAAACAGTTCCAGCATCCGGTGGAATGGGTGACGGAAGATATCCGCCGCTATGTGGAACGCACCGGCAAACGGAAAGTCATTTTTGTCGATTTAAACCTGGTGTCTGATATCGGCTACGCCAAACGGCTGTTTACGGCGCTGATCCCGCTGAATATTCAGTGGTTCGGATTATCCACGGTACTGATAGCACATAACCACGAATTGATGGAGCTGATGGCTCGCAGCGGCTGTAAAGGGTTGTTGCTGGGGCTGGAAACCGTCAGTGACGGCAGCCTGAAAGATGCCGGGAAGAAATTTAACGGATCGGTGGATTACAAAGAATTAATCGGCGATTTGCACCGCTTAAAGATAGCTATTCAGGGCTGTTTTGTGTTCGGACTGGATCACGATACCACGGATGTATTTGATCGCACGGTTGATTTGGCGATCGATGCCGGAATTGATTTACCGCGTTTTTCTGTTCTGACGCCGTTTCCCGGTACGCCGCTGTTTAAGCGCCTGGAAGAGGAACAACGGATCTTAACTACGGACTGGTCGTTGTATGACGCGCAGCATGTGGTATTCCGTCCGGCGCTGATGAGTGCACGCGACCTGGAGCTCGGTCATGAGCGCGCCTGGAAAAAAGTGTACCGCTACAGCAGTATTGCGCGGCGCTTATGGCAGGCGCGTAATTTTAAACCGCTGGCGCTGACGGCAAACCTGGGTTACCGATTCTATGCGCATCATTTACATCAGTATTACACCTGTGACTGGCCGATTGAGCATCATCCGGCAAAGTCGGGTAACAACTGATGCGGCTGACCTTTATTCATCCGGCGATTGGTCACCGGCGCGGTGAGGCG