Homologs in group_3660

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12555 FBDBKF_12555 82.8 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12595 FBDBKF_12595 39.5 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07830 F4V73_RS07830 41.1 Morganella psychrotolerans - radical SAM protein

Distribution of the homologs in the orthogroup group_3660

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3660

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q55914 1.62e-72 239 34 9 413 3 slr0309 Uncharacterized methyltransferase slr0309 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8KCU0 1.02e-52 186 29 5 394 1 bchR Bacteriochlorophyllide d C-12(1)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q8KBK9 1.32e-45 167 26 11 435 1 bchQ Bacteriochlorophyllide d C-8(2)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
O58549 4.47e-45 166 29 14 450 3 PH0819 Uncharacterized methyltransferase PH0819 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P42349 5.62e-25 110 25 10 349 4 sll1242 Uncharacterized methyltransferase sll1242 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
B3QHD1 1.46e-19 94 24 10 359 1 hpnP Hopanoid C-2 methylase Rhodopseudomonas palustris (strain TIE-1)
P26168 4.76e-15 80 24 15 353 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q9RFD3 5.98e-15 80 24 12 351 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
Q7X2C7 1.08e-11 70 21 16 458 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rubrivivax gelatinosus
Q60AV6 5.05e-11 68 24 12 340 1 hpnR Hopanoid C-3 methylase Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Q55373 2.21e-09 63 22 4 215 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q58275 2.45e-09 62 23 12 343 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q6LNA5 1.38e-08 60 22 12 294 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Photobacterium profundum (strain SS9)
Q56184 2.05e-08 60 24 3 162 1 fom3 Cytidylyl-2-hydroxyethylphosphonate methyltransferase Streptomyces wedmorensis
A0KN81 8.53e-07 54 24 11 280 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A4SJX4 2.32e-06 53 24 12 281 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Aeromonas salmonicida (strain A449)
Q58882 3.11e-06 52 21 13 304 3 MJ1487 Uncharacterized methyltransferase MJ1487 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9WZT7 1.55e-05 50 22 12 276 3 mtaB Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q4ZN97 3.61e-05 49 25 7 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas syringae pv. syringae (strain B728a)
Q48DN8 3.61e-05 49 25 7 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
Q3K6B7 4.86e-05 49 23 8 243 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas fluorescens (strain Pf0-1)
A6WWX6 5.32e-05 49 22 18 441 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)
Q4K5I3 9.98e-05 48 25 6 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q87VY1 0.000116 48 25 7 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Q89AC2 0.00012 48 22 10 277 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q57AB1 0.000126 48 23 17 404 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Brucella abortus biovar 1 (strain 9-941)
Q2YQS8 0.000126 48 23 17 404 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Brucella abortus (strain 2308)
B2S9E5 0.000126 48 23 17 404 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Brucella abortus (strain S19)
Q47Y80 0.000128 48 25 8 204 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
Q92SI7 0.000129 47 23 11 262 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Rhizobium meliloti (strain 1021)
Q8FXU4 0.000135 47 23 17 404 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Brucella suis biovar 1 (strain 1330)
A9M9Y3 0.000135 47 23 17 404 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Brucella canis (strain ATCC 23365 / NCTC 10854 / RM-666)
Q8YEA2 0.000145 47 23 17 404 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q5QYC5 0.000157 47 26 8 192 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
A1U494 0.000157 47 25 8 192 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8)
B5XZQ0 0.000206 47 22 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Klebsiella pneumoniae (strain 342)
Q87RP4 0.000231 47 24 10 260 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
B2TU59 0.000263 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q3Z4D1 0.000265 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shigella sonnei (strain Ss046)
Q324N4 0.000265 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shigella boydii serotype 4 (strain Sb227)
Q32IR1 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shigella dysenteriae serotype 1 (strain Sd197)
B7LKU3 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B1LLB3 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli (strain SMS-3-5 / SECEC)
B7N9R6 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P0AEI1 0.000272 47 23 12 279 1 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli (strain K12)
B1IYE7 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0AEI2 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TK19 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A7ZXT0 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O9:H4 (strain HS)
B1X656 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli (strain K12 / DH10B)
B7M5I8 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O8 (strain IAI1)
B7NM12 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B5YQL3 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O157:H7 (strain EC4115 / EHEC)
P0AEI3 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O157:H7
B7L9K8 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli (strain 55989 / EAEC)
A7ZJ54 0.000272 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O139:H28 (strain E24377A / ETEC)
Q83LY3 0.000275 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shigella flexneri
Q0T6S0 0.000275 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shigella flexneri serotype 5b (strain 8401)
B6HYN0 0.000275 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli (strain SE11)
B7MPH7 0.000279 47 23 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Escherichia coli O81 (strain ED1a)
A4YJD7 0.000308 46 22 12 331 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Bradyrhizobium sp. (strain ORS 278)
Q9KTE0 0.00033 46 25 6 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F2X6 0.00033 46 25 6 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
B0BQR0 0.000377 46 25 8 192 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
B3GYA4 0.000387 46 25 8 192 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3N1X3 0.000387 46 25 8 192 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Actinobacillus pleuropneumoniae serotype 5b (strain L20)
A5VTA1 0.000418 46 23 17 404 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q1QV24 0.000434 46 26 8 215 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
A6T6B5 0.000456 46 22 12 279 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A7N1G9 0.000484 46 26 8 207 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio campbellii (strain ATCC BAA-1116)
A6V0C9 0.000511 45 23 6 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas aeruginosa (strain PA7)
Q7MN00 0.000515 46 26 7 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Vibrio vulnificus (strain YJ016)
A4Y9E1 0.000562 45 25 8 193 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
Q3IK75 0.000567 45 25 6 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudoalteromonas translucida (strain TAC 125)
A7HK86 0.000586 45 21 15 334 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)
A1RGV4 0.000592 45 25 8 193 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Shewanella sp. (strain W3-18-1)
Q51470 0.000676 45 23 6 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02SE8 0.000676 45 23 6 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudomonas aeruginosa (strain UCBPP-PA14)
B6EIN8 0.000892 45 21 9 276 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Aliivibrio salmonicida (strain LFI1238)
Q15TR4 0.001 45 25 6 191 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Q1LU21 0.001 45 25 11 266 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Baumannia cicadellinicola subsp. Homalodisca coagulata

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07790
Feature type CDS
Gene -
Product radical SAM protein
Location 1625894 - 1627240 (strand: 1)
Length 1347 (nucleotides) / 448 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3660
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF04055 Radical SAM superfamily
PF13282 Domain of unknown function (DUF4070)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1032 General function prediction only (R) R Radical SAM superfamily enzyme YgiQ, UPF0313 family

Protein Sequence

MNILLILPFDRTYRYRKSAFSVAISYAPLTLITLAALVPPHLNAELTLTDEGVSPPVTTGDFDLVVITATASSSPRAYALCHYWRQRGAYVAMGGAHVTLQPDESAHYADTVMIGAGEHIWPQFLQDFADGHPLTRYQHTPERGYLPMPVPRRDLLPRRTYMKIPTIIADRGCPLSCDFCSIQHQWGRKGTARPVEEVIEEIKLSGERRWIFLDPNLYADRAYSLALFRALSPLDIRWSGLATLNVTDDEEVFRALCDSGCEGLLIGLENLSQHTMSAVGKRCNQVSEYQRQIRLLRDNKIAALGCFVLGFDEDTPESIRDTLRRIPALGLDLVRFSVLTPLPGTRLWERMKQEGRLITQDLSLYDNEHVVFQPKQMSPEELHALLHEAWRETYRLSAIGRRIFSHPGNRLIRLAANLGFRLYGRRLRRENPALFSPLVVTDNTRKSD

Flanking regions ( +/- flanking 50bp)

CTGTGTCATTGTTGCCTTACTTATGTCAAATTCAGGAACAGGATACAGCGGTGAATATTTTACTGATTTTGCCGTTTGACAGAACGTACCGTTACCGGAAAAGTGCGTTTTCTGTTGCCATCAGTTATGCCCCGCTGACCCTTATCACACTTGCCGCCCTTGTTCCGCCACACCTGAACGCAGAACTGACACTGACAGATGAAGGTGTTTCCCCGCCTGTCACCACCGGCGATTTTGATCTCGTGGTTATCACCGCCACCGCCTCTTCTTCTCCGCGTGCTTATGCGCTGTGCCATTATTGGCGGCAGCGCGGAGCATATGTTGCAATGGGCGGGGCACATGTCACGCTGCAACCTGATGAATCTGCACATTATGCAGATACCGTCATGATCGGCGCAGGTGAACACATCTGGCCGCAATTTTTGCAGGACTTTGCGGACGGACATCCCCTTACCCGCTATCAGCACACACCGGAGCGGGGTTATCTGCCAATGCCGGTACCGCGCCGTGATCTGCTTCCCCGCCGTACTTATATGAAAATTCCGACGATTATTGCCGATCGCGGCTGTCCGCTGTCCTGTGACTTTTGTTCGATACAGCATCAGTGGGGACGAAAAGGGACAGCCCGCCCGGTTGAAGAGGTCATTGAAGAGATAAAACTCAGCGGTGAACGACGCTGGATTTTTCTTGACCCGAATCTGTATGCCGATCGCGCATACAGCCTCGCGCTCTTTCGCGCTCTGAGCCCCTTGGATATCCGCTGGTCCGGGCTGGCAACGCTTAATGTGACCGATGACGAAGAGGTATTCCGCGCCCTGTGTGACAGTGGCTGTGAAGGATTATTGATCGGGCTCGAAAATCTCAGTCAGCACACCATGAGCGCTGTCGGAAAGCGCTGTAATCAGGTCAGTGAATACCAGCGGCAGATCCGCCTTCTGCGTGATAATAAAATCGCCGCACTCGGCTGTTTTGTTCTGGGTTTTGATGAAGATACCCCGGAGAGTATCCGCGACACTCTCCGCCGGATACCGGCTCTCGGGCTGGATCTGGTGCGTTTTTCTGTCCTGACGCCGCTGCCCGGAACCAGGTTGTGGGAAAGAATGAAGCAGGAAGGCCGGTTAATCACACAAGACCTGAGTTTATATGACAACGAACATGTTGTTTTCCAGCCCAAACAGATGTCGCCGGAAGAACTGCACGCGTTGCTGCATGAAGCCTGGCGTGAAACATACCGCCTGTCCGCTATCGGGCGGCGGATTTTCAGCCATCCGGGAAACCGTCTGATCCGCCTGGCGGCAAACCTCGGTTTCCGTCTCTATGGCCGTCGTTTGCGCCGGGAAAACCCCGCCCTGTTTAGTCCTTTGGTAGTCACTGATAACACAAGGAAGTCTGACTGATGCGCCTTTTGCTTAACGCTGTTTTACTGATTTTATCAATGACGGCAGCG