Homologs in group_2899

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5 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12575 FBDBKF_12575 41.0 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12580 FBDBKF_12580 73.4 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12590 FBDBKF_12590 43.3 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07810 F4V73_RS07810 41.9 Morganella psychrotolerans - radical SAM protein
F4V73_RS07825 F4V73_RS07825 42.4 Morganella psychrotolerans - radical SAM protein

Distribution of the homologs in the orthogroup group_2899

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2899

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q55914 2.23e-59 204 32 10 411 3 slr0309 Uncharacterized methyltransferase slr0309 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8KCU0 6.29e-58 200 28 9 415 1 bchR Bacteriochlorophyllide d C-12(1)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q8KBK9 1.31e-49 177 28 5 366 1 bchQ Bacteriochlorophyllide d C-8(2)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
P42349 6.42e-27 116 25 8 348 4 sll1242 Uncharacterized methyltransferase sll1242 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
B3QHD1 1.42e-25 112 26 9 362 1 hpnP Hopanoid C-2 methylase Rhodopseudomonas palustris (strain TIE-1)
O58549 1.27e-20 97 25 14 387 3 PH0819 Uncharacterized methyltransferase PH0819 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q7X2C7 9.95e-19 92 24 14 386 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rubrivivax gelatinosus
P26168 8.18e-18 89 23 13 387 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q9RFD3 3.73e-17 87 23 13 382 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
Q58275 4.76e-12 71 23 11 310 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O29021 1.71e-07 57 25 15 313 3 AF_1247 Probable threonylcarbamoyladenosine tRNA methylthiotransferase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
A4SCW6 4.87e-07 55 24 14 333 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Chlorobium phaeovibrioides (strain DSM 265 / 1930)
Q04ZD0 6.51e-07 55 22 9 284 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Leptospira borgpetersenii serovar Hardjo-bovis (strain L550)
Q04R21 7.3e-07 55 22 9 284 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)
Q2JSD0 4.55e-06 52 23 15 326 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Synechococcus sp. (strain JA-3-3Ab)
Q8F710 1.3e-05 50 22 7 277 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
Q72PC8 2.25e-05 50 23 11 315 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)
Q60AV6 3.53e-05 49 21 16 357 1 hpnR Hopanoid C-3 methylase Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
A5GBX9 5.08e-05 49 23 9 210 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Geotalea uraniireducens (strain Rf4)
Q56184 5.81e-05 48 22 8 265 1 fom3 Cytidylyl-2-hydroxyethylphosphonate methyltransferase Streptomyces wedmorensis
A9WDA3 0.000149 47 25 8 212 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Q6MBU9 0.000182 47 21 15 325 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Protochlamydia amoebophila (strain UWE25)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07815
Feature type CDS
Gene -
Product radical SAM protein
Location 1630925 - 1632256 (strand: -1)
Length 1332 (nucleotides) / 443 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2899
Orthogroup size 6
N. genomes 2

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Genomic region

Domains

PF04055 Radical SAM superfamily

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1032 General function prediction only (R) R Radical SAM superfamily enzyme YgiQ, UPF0313 family

Protein Sequence

MAGGGSVVNIVLIYPNMGDYRTKDAMTPLAIGILAALSPGHRLTFYDDRLEKIPDSLPDADLIAISVETFTARRSYQLADKFRQQGKRVALGGCHITFMPDEAANHADTLLLGDAEGAWEQMLADAERGRLRSCYQGDHTRPLTEYKLDRQIFTGKRYAPISLVQYSRGCRFACDFCSIHAFYPGGVRTRPAVQVREEIRSLPANRFILFVDDNLFSGRRSLNDFLQMLAPLKRCWGCQISIDIARDESMLDALAQAGCGFVLIGFESLNSANLRQMGKSWNHSAGDYAAVVAALHQRGIGVYGTFIFGYDGDTPDTIAQCLHFAQENRLEVANFNLLNPTPGTALYDRLKSQGRLLSPHWWIDPDYRYGDPVFTPGGMSTEQLTELCFQTKTRFYRFGSVIRRLCRFSPRRRWRTLWVAWLVNIVSHREIARKQGKQPGGKA

Flanking regions ( +/- flanking 50bp)

ATCTATGGTGTGGATCTCACCGCAGCGCCAATGTGGGACGGGCGGATTGTGTGGCCGGAGGTGGCTCTGTTGTGAACATCGTGCTTATCTACCCGAATATGGGAGATTACCGCACGAAAGATGCAATGACGCCGCTGGCGATAGGTATTCTGGCGGCGCTGTCACCGGGGCACCGCCTGACATTTTATGATGATCGTCTGGAGAAAATTCCGGACTCCCTGCCGGACGCGGATCTCATTGCGATATCGGTTGAAACCTTTACTGCCCGGCGCAGTTACCAACTGGCGGATAAATTTCGTCAGCAGGGCAAAAGAGTGGCGCTCGGCGGCTGTCACATTACGTTTATGCCGGATGAGGCTGCAAATCACGCAGATACGCTTCTGCTGGGTGATGCAGAGGGCGCATGGGAGCAGATGCTCGCGGATGCTGAACGCGGCAGACTGCGTTCCTGCTATCAGGGGGATCACACGCGCCCGCTGACAGAGTATAAACTTGACCGGCAGATTTTTACCGGCAAGCGTTACGCGCCTATCTCGCTGGTGCAGTATTCGCGGGGCTGCCGTTTTGCCTGTGATTTTTGCTCCATTCATGCGTTTTATCCGGGCGGCGTGCGTACCCGTCCGGCAGTACAGGTGCGTGAAGAGATCCGTTCTCTGCCTGCCAATCGCTTCATTTTGTTTGTCGATGACAATCTGTTTTCCGGTCGCCGGTCGCTGAATGATTTTTTACAGATGCTTGCGCCGCTGAAACGGTGTTGGGGCTGTCAGATAAGCATCGATATAGCGCGTGATGAAAGCATGCTGGATGCATTGGCGCAGGCGGGCTGCGGTTTTGTGCTGATAGGCTTTGAAAGCCTGAACAGTGCGAATTTACGGCAGATGGGAAAATCCTGGAATCATTCAGCGGGTGATTATGCCGCTGTTGTGGCGGCGCTGCATCAGCGCGGGATCGGCGTTTACGGCACTTTTATTTTTGGTTACGACGGCGATACACCCGATACCATTGCGCAGTGTCTGCATTTTGCACAGGAAAACCGGCTGGAAGTCGCGAATTTTAATTTACTGAACCCTACTCCCGGTACAGCGCTGTACGACAGACTAAAATCACAGGGAAGGCTGTTGTCACCGCACTGGTGGATTGACCCGGATTACCGCTACGGTGACCCGGTCTTTACGCCCGGCGGCATGAGTACGGAACAACTGACCGAACTCTGTTTTCAGACCAAAACCCGGTTTTACCGGTTTGGCTCTGTTATCCGGCGGCTCTGCCGGTTTAGTCCGCGACGGCGCTGGCGCACATTGTGGGTGGCGTGGCTGGTCAATATTGTTTCCCACCGGGAAATAGCCCGCAAACAAGGGAAACAGCCGGGGGGAAAAGCATGAAGCTGATACTGATCAAACCCAATATCGGACGGCGCGAACACAGTCTTTAT