Homologs in group_3660

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12590 FBDBKF_12590 43.4 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07815 F4V73_RS07815 73.4 Morganella psychrotolerans - radical SAM protein
F4V73_RS07825 F4V73_RS07825 42.4 Morganella psychrotolerans - radical SAM protein

Distribution of the homologs in the orthogroup group_3660

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3660

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q55914 3.1e-60 206 33 9 409 3 slr0309 Uncharacterized methyltransferase slr0309 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8KCU0 4.84e-56 194 29 10 415 1 bchR Bacteriochlorophyllide d C-12(1)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q8KBK9 8.64e-53 186 29 5 366 1 bchQ Bacteriochlorophyllide d C-8(2)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
B3QHD1 2.49e-28 120 27 11 367 1 hpnP Hopanoid C-2 methylase Rhodopseudomonas palustris (strain TIE-1)
P42349 2.9e-23 105 26 10 351 4 sll1242 Uncharacterized methyltransferase sll1242 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O58549 4.5e-18 89 23 13 398 3 PH0819 Uncharacterized methyltransferase PH0819 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q7X2C7 6.55e-17 86 25 13 368 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rubrivivax gelatinosus
P26168 2.06e-16 85 23 13 388 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
Q9RFD3 4.15e-16 84 23 9 342 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
Q58275 3.26e-08 59 23 14 336 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q1GK98 1.27e-06 54 26 9 213 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Ruegeria sp. (strain TM1040)
Q55373 3.99e-06 52 21 18 460 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9WZT7 5.42e-06 52 22 11 282 3 mtaB Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q56184 9.77e-06 51 27 6 196 1 fom3 Cytidylyl-2-hydroxyethylphosphonate methyltransferase Streptomyces wedmorensis
A9WDA3 3.22e-05 49 23 12 312 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
O29021 3.41e-05 49 23 12 311 3 AF_1247 Probable threonylcarbamoyladenosine tRNA methylthiotransferase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q5LLM0 0.000345 46 25 9 213 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)
A4SCW6 0.000504 45 22 12 323 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Chlorobium phaeovibrioides (strain DSM 265 / 1930)
Q2G9P6 0.0009 45 23 12 314 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CCUG 56034 / CIP 105152 / NBRC 16084 / F199)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_12580
Feature type CDS
Gene ygiQ
Product Radical SAM superfamily enzyme YgiQ, UPF0313 family
Location 31013 - 32323 (strand: -1)
Length 1311 (nucleotides) / 436 (amino acids)
In genomic island -

Contig

Accession contig_15
Length 114235 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3660
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF04055 Radical SAM superfamily

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1032 General function prediction only (R) R Radical SAM superfamily enzyme YgiQ, UPF0313 family

Protein Sequence

MNIVLIYPNMGDYRTKDAMTPLAIGILAALSPGHRVTFYDDRLDNIPESLPDADLIAISVETFTAQRSYQLADRFRRQGKTVVMGGCHVTFMPDEALQHADSVLLGDAEGAWEQMLADCEQNALKPRYRGAHDRPLAGYRLDRTIFEGKRYAPVSLVQFSRGCRFACDFCSIHAFYPEGVRTRPVDEMRDEILSLPAKRFLIFVDDNLFAGKRALNELLAMLTPLKRRWGCQISIDIARNEEMLDKLAAAGCCFVLIGFESLNETTLRRMGKSRSHTADDYAAVLAALYRRGICVYGTFIFGYDEDTPETIRSTLAFAESNKLAIANFNLLIPTPGTALYARLEAEGRLIYPAWWLDQDFRYGEPAFRPGGMNTAELAAGCFYARTRFYRYASVIRRLCRSGCRSGWRTLLVAWLYNIASHRDIARKQGKRPGEKE

Flanking regions ( +/- flanking 50bp)

GCCGCACCACAGTGGGACGGCCGCATTGTCTGGCCGGAGATAGCGCTGCTGTGAATATCGTGCTGATCTACCCGAACATGGGGGATTACCGCACCAAAGACGCTATGACGCCATTGGCGATCGGCATCCTGGCTGCCCTGTCGCCGGGGCACCGGGTCACATTTTATGACGACCGGCTGGATAACATCCCGGAATCACTGCCTGATGCGGATCTGATCGCCATTTCGGTGGAAACGTTCACGGCACAGCGCAGTTATCAGCTGGCTGACCGGTTCCGCCGTCAGGGTAAAACCGTGGTGATGGGCGGCTGCCACGTCACTTTTATGCCGGATGAAGCACTGCAGCATGCGGACAGCGTGCTGCTCGGTGATGCGGAAGGGGCGTGGGAACAGATGCTGGCGGATTGTGAACAGAATGCGCTGAAACCCCGTTACCGGGGCGCGCATGACCGCCCGCTTGCCGGTTACCGCCTTGACCGCACCATTTTTGAGGGTAAACGCTACGCGCCGGTGTCGCTGGTGCAGTTCTCGCGCGGCTGCCGGTTTGCCTGTGATTTTTGCTCTATCCATGCATTTTATCCGGAAGGTGTGCGTACCCGGCCGGTTGATGAGATGCGGGATGAAATTTTATCTCTGCCTGCAAAGCGCTTTCTGATTTTTGTGGATGACAATCTTTTTGCCGGTAAGCGGGCGCTGAATGAGTTGCTGGCGATGCTCACACCGCTGAAACGCCGCTGGGGATGCCAGATAAGTATCGATATCGCCCGTAATGAGGAAATGCTGGATAAACTGGCCGCCGCCGGCTGCTGCTTCGTGCTGATCGGCTTTGAAAGCCTGAATGAAACCACGCTGAGGCGGATGGGAAAATCCCGCAGCCATACGGCGGATGATTATGCTGCCGTACTGGCGGCGCTGTACCGGCGTGGTATCTGTGTCTACGGCACTTTTATTTTCGGCTATGACGAAGACACGCCGGAGACCATCCGCAGCACACTGGCGTTTGCGGAGAGTAACAAACTGGCGATTGCCAATTTTAACCTGCTGATCCCGACCCCCGGCACGGCGTTGTATGCCCGGCTGGAGGCTGAAGGACGGCTGATTTATCCGGCCTGGTGGCTTGACCAGGATTTCCGCTACGGCGAACCGGCTTTCCGGCCGGGCGGAATGAATACCGCAGAACTGGCTGCCGGATGTTTTTATGCCCGCACCCGCTTTTATCGTTATGCATCTGTTATCCGGCGTCTGTGCCGTTCCGGCTGCCGGAGTGGCTGGCGCACGCTGCTGGTCGCCTGGCTTTACAATATTGCCTCGCACCGGGATATCGCCCGCAAGCAGGGAAAACGCCCGGGAGAAAAAGAGTGAAACTGATACTGATTAAACCGAATATCGGCCGTCAGGAGCACAGTCTGTAT