Orthogroup:group_3660


Homologs in group_3660

Help

4 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_12555 FBDBKF_12555 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
FBDBKF_12595 FBDBKF_12595 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07790 F4V73_RS07790 Morganella psychrotolerans - radical SAM protein
F4V73_RS07830 F4V73_RS07830 Morganella psychrotolerans - radical SAM protein

Distribution of group_3660 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_3660 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3660

Orthogroup content: 4 members

Help

This page summarizes the annotation of all members of the orthologous group group_3660.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ygiQ 2
2 - 2

Product

# Product Occurence
1 Radical SAM superfamily enzyme YgiQ, UPF0313 family 2
2 radical SAM protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1032 4 R General function prediction only (R) Radical SAM superfamily enzyme YgiQ, UPF0313 family

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02310 2 B12 binding domain
PF04055 4 Radical SAM superfamily
PF13282 2 Domain of unknown function (DUF4070)

Annotations of the 201 SwissProt hits

Annotation Number of occurrences
Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase 4
Bacteriochlorophyllide d C-12(1)-methyltransferase 1
Bacteriochlorophyllide d C-8(2)-methyltransferase 1
Cytidylyl-2-hydroxyethylphosphonate methyltransferase 1
Hopanoid C-2 methylase 1
Hopanoid C-3 methylase 1
Putative methylthiotransferase MJ0865 1
Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB 1
Tryptophan 2-C-methyltransferase 1
Uncharacterized methyltransferase MJ1487 1
Uncharacterized methyltransferase PH0819 1
Uncharacterized methyltransferase sll1242 1
Uncharacterized methyltransferase slr0309 1
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 185

Protein length

Min length 448
Max length 464
Mean length (sd) 458.2 (7.6)
Median length 460.5

Protein length distribution