Homologs in group_3660

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3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12580 FBDBKF_12580 43.4 Morganella morganii S1 ygiQ Radical SAM superfamily enzyme YgiQ, UPF0313 family
F4V73_RS07815 F4V73_RS07815 44.3 Morganella psychrotolerans - radical SAM protein
F4V73_RS07825 F4V73_RS07825 92.4 Morganella psychrotolerans - radical SAM protein

Distribution of the homologs in the orthogroup group_3660

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3660

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q55914 3.39e-54 191 30 4 387 3 slr0309 Uncharacterized methyltransferase slr0309 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8KCU0 3.16e-53 187 28 7 404 1 bchR Bacteriochlorophyllide d C-12(1)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q8KBK9 9.71e-52 183 28 7 401 1 bchQ Bacteriochlorophyllide d C-8(2)-methyltransferase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
P42349 2.14e-25 112 25 8 348 4 sll1242 Uncharacterized methyltransferase sll1242 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9RFD3 3.35e-24 108 25 20 461 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
O58549 6.22e-24 107 25 14 383 3 PH0819 Uncharacterized methyltransferase PH0819 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P26168 8.39e-24 107 26 20 461 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
B3QHD1 1.7e-23 106 23 11 354 1 hpnP Hopanoid C-2 methylase Rhodopseudomonas palustris (strain TIE-1)
Q7X2C7 7.39e-21 98 24 16 453 1 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Rubrivivax gelatinosus
Q55373 9.49e-12 70 26 11 298 3 bchE Anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q56184 3.89e-11 68 29 4 154 1 fom3 Cytidylyl-2-hydroxyethylphosphonate methyltransferase Streptomyces wedmorensis
Q58275 1.06e-08 60 24 9 302 3 MJ0865 Putative methylthiotransferase MJ0865 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q60AV6 1.56e-06 53 25 6 194 1 hpnR Hopanoid C-3 methylase Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Q82SI7 1.96e-06 53 24 19 370 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)
Q1IYM0 2.31e-05 50 26 9 206 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Deinococcus geothermalis (strain DSM 11300 / CIP 105573 / AG-3a)
Q9RV79 2.99e-05 50 24 7 198 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q47RT4 3.18e-05 50 25 9 182 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Thermobifida fusca (strain YX)
Q58882 4.83e-05 49 19 13 341 3 MJ1487 Uncharacterized methyltransferase MJ1487 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
A6LAJ6 0.000146 47 23 11 235 3 rimO Ribosomal protein uS12 methylthiotransferase RimO Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)
Q4JV79 0.000238 47 24 10 205 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Corynebacterium jeikeium (strain K411)
Q5SME9 0.000662 45 23 5 193 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q72J39 0.00081 45 23 5 193 3 miaB tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_12590
Feature type CDS
Gene ygiQ
Product Radical SAM superfamily enzyme YgiQ, UPF0313 family
Location 33345 - 34691 (strand: -1)
Length 1347 (nucleotides) / 448 (amino acids)
In genomic island -

Contig

Accession contig_15
Length 114235 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3660
Orthogroup size 4
N. genomes 2

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Genomic region

Domains

PF04055 Radical SAM superfamily

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1032 General function prediction only (R) R Radical SAM superfamily enzyme YgiQ, UPF0313 family

Protein Sequence

MRLTFIHPAIGHRRGETYLRSWQMEPLPVAALKGLTPADIETRFYDDRLELIQFDEPADLISISVETYTAKRAYQIASEYRKRGVPVLMGGFHATLMPEEVKRFADVIITGEAESVWETMIDDLRHGTLQREYHGTQTDLRSIRVDRSLFAGKRYLPIGLVETGRGCRFHCEFCAVQSFYQQRYRRRDPDHVLRELAGLKGTKNLFFFVDDNFAGSLRESREFLPALAKAGIRWVTQMSIDAAHDEEFVRALSQAGCRGVLIGFESLNEANLRQMKKGFNTMKGGYSQALANLRRHHIAVYGTFVFGYDHDTPDSFGEAVAYAREQSMYIAAFNHMTPFPGTPLYARLAQENRLRFEHWWLDDHYRYNELPFSPAQLSPEAVTQGCLSARKAFYSSRSILQRSWRNRGDFFMFRNYFPINWLHHREISCRNGYPLGDENWQGKLAEVK

Flanking regions ( +/- flanking 50bp)

ACCTGTGACTGGCCGGTTGAACACCGTCCGGCGAAGTCGGGCAGCCACTGATGCGGCTGACATTTATTCATCCGGCGATCGGCCACCGGCGCGGCGAAACCTATCTGCGATCCTGGCAGATGGAGCCTCTGCCGGTCGCGGCACTGAAAGGGCTGACACCGGCGGATATTGAAACACGGTTTTACGACGATCGTCTGGAGCTGATCCAGTTTGATGAACCGGCAGATCTGATCTCAATTTCAGTTGAAACCTATACCGCGAAGCGGGCCTATCAGATAGCCAGTGAGTACAGAAAGCGCGGTGTGCCGGTGCTGATGGGCGGGTTTCACGCCACGCTGATGCCGGAGGAAGTGAAACGCTTTGCGGATGTCATTATCACCGGAGAGGCGGAATCAGTCTGGGAAACCATGATTGATGATTTACGCCACGGCACACTGCAGCGGGAATATCACGGAACACAGACTGATCTGCGCAGTATCCGTGTTGATCGCAGCCTGTTCGCGGGAAAACGTTATCTGCCGATAGGGCTGGTGGAAACCGGGCGCGGCTGCCGTTTCCACTGTGAATTCTGTGCGGTGCAGTCGTTCTATCAGCAGCGTTACCGGCGGCGCGATCCGGATCATGTGCTGAGGGAACTGGCGGGTCTCAAAGGCACAAAAAATCTGTTTTTCTTTGTGGATGATAATTTCGCGGGCAGCCTGCGGGAAAGCCGCGAGTTTCTGCCGGCACTGGCGAAAGCCGGGATCCGCTGGGTGACCCAGATGAGTATTGATGCCGCACATGATGAGGAATTTGTCCGCGCGCTGTCACAGGCTGGTTGCCGGGGCGTGCTGATTGGCTTTGAATCCCTGAATGAAGCCAATCTGCGGCAGATGAAAAAAGGGTTTAACACCATGAAAGGCGGCTACAGTCAGGCACTGGCTAACCTTCGCCGCCATCATATTGCCGTTTACGGCACATTTGTGTTCGGCTATGACCATGATACCCCGGACTCATTCGGCGAGGCGGTGGCTTACGCCCGCGAACAGAGTATGTATATCGCGGCATTCAACCATATGACGCCGTTTCCGGGAACGCCGCTTTATGCGCGGCTGGCGCAGGAAAACCGCCTGCGCTTTGAGCACTGGTGGCTCGATGATCATTACCGTTACAACGAACTGCCGTTCAGTCCGGCACAGCTGTCTCCGGAGGCAGTAACGCAGGGGTGCCTCTCAGCAAGGAAGGCATTTTACAGTTCACGCTCGATTCTTCAGCGCAGCTGGCGTAACCGGGGCGATTTCTTTATGTTTCGCAACTATTTCCCGATTAACTGGCTGCATCACCGTGAAATCAGCTGCCGCAACGGCTATCCGCTCGGTGATGAGAATTGGCAGGGTAAATTAGCAGAGGTTAAATGATAGAGGTTATTGACGCGACAACGGAGCATATCGCGGATTTACTCAGGCTC