COG0042


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0042, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 31 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA-dihydrouridine synthase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0042 is associated with 31 different proteins (see tab "Protein list" and "Profile")
The 31 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_756 FBDBKF_03375 76912 77883 1 dusB tRNA dihydrouridine synthase DusB Morganella morganii S1
1 group_87 FBDBKF_06695 1809 2423 1 tRNA-dihydrouridine synthase C Morganella morganii S1
2 group_87 FBDBKF_09520 1814 2746 -1 dusC tRNA dihydrouridine(16) synthase DusC Morganella morganii S1
3 group_3296 FBDBKF_09530 4480 4788 -1 tRNA-dihydrouridine synthase C Morganella morganii S1
4 group_2230 FBDBKF_17065 45322 46368 -1 dusA tRNA dihydrouridine(20/20a) synthase DusA Morganella morganii S1
5 group_87 EHELCC_04275 183763 184377 -1 tRNA-dihydrouridine synthase C Morganella morganii S2
6 group_87 EHELCC_04320 193779 194711 -1 dusC tRNA dihydrouridine(16) synthase DusC Morganella morganii S2
7 group_3296 EHELCC_04330 196445 196753 -1 tRNA-dihydrouridine synthase C Morganella morganii S2
8 group_756 EHELCC_07160 169220 170191 -1 dusB tRNA dihydrouridine synthase DusB Morganella morganii S2
9 group_2230 EHELCC_16525 22142 23188 1 dusA tRNA dihydrouridine(20/20a) synthase DusA Morganella morganii S2
10 group_87 NLDBIP_04275 183559 184173 -1 tRNA-dihydrouridine synthase C Morganella morganii S4
11 group_87 NLDBIP_04320 193575 194507 -1 dusC tRNA dihydrouridine(16) synthase DusC Morganella morganii S4
12 group_3296 NLDBIP_04330 196241 196549 -1 tRNA-dihydrouridine synthase C Morganella morganii S4
13 group_756 NLDBIP_07485 169093 170064 -1 dusB tRNA dihydrouridine synthase DusB Morganella morganii S4
14 group_2230 NLDBIP_16735 22142 23188 1 dusA tRNA dihydrouridine(20/20a) synthase DusA Morganella morganii S4
15 group_756 LHKJJB_07020 132839 133810 -1 dusB tRNA dihydrouridine synthase DusB Morganella morganii S3
16 group_87 LHKJJB_10105 183673 184287 -1 tRNA-dihydrouridine synthase C Morganella morganii S3
17 group_3296 LHKJJB_14300 138829 139137 1 tRNA-dihydrouridine synthase C Morganella morganii S3
18 group_87 LHKJJB_14310 140871 141803 1 dusC tRNA dihydrouridine(16) synthase DusC Morganella morganii S3
19 group_2230 LHKJJB_16735 45322 46368 -1 dusA tRNA dihydrouridine(20/20a) synthase DusA Morganella morganii S3
20 group_756 HKOGLL_03910 99577 100548 1 dusB tRNA dihydrouridine synthase DusB Morganella morganii S5
21 group_87 HKOGLL_08870 6765 7379 1 tRNA-dihydrouridine synthase C Morganella morganii S5
22 group_87 HKOGLL_12225 2595 3527 -1 dusC tRNA dihydrouridine(16) synthase DusC Morganella morganii S5
23 group_3296 HKOGLL_12235 5261 5569 -1 tRNA-dihydrouridine synthase C Morganella morganii S5
24 group_2230 HKOGLL_18880 22142 23188 1 dusA tRNA dihydrouridine(20/20a) synthase DusA Morganella morganii S5
25 group_87 F4V73_RS00835 173370 174362 1 dusC tRNA dihydrouridine(16) synthase DusC Morganella psychrotolerans
26 group_756 F4V73_RS11555 460873 461844 -1 dusB tRNA dihydrouridine synthase DusB Morganella psychrotolerans
27 group_2230 F4V73_RS18545 46293 47339 -1 dusA tRNA dihydrouridine(20/20a) synthase DusA Morganella psychrotolerans
28 group_87 PMI_RS03060 674541 675473 1 dusC tRNA dihydrouridine(16) synthase DusC Proteus mirabilis HI4320
29 group_2230 PMI_RS13500 2991572 2992606 1 dusA tRNA dihydrouridine(20/20a) synthase DusA Proteus mirabilis HI4320
30 group_756 PMI_RS18025 3959954 3960925 -1 dusB tRNA dihydrouridine synthase DusB Proteus mirabilis HI4320