Orthogroup:group_85


Homologs in group_85

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04895 FBDBKF_04895 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
FBDBKF_10875 FBDBKF_10875 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_05350 EHELCC_05350 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_06185 EHELCC_06185 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_05670 NLDBIP_05670 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_06505 NLDBIP_06505 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_02550 LHKJJB_02550 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_03385 LHKJJB_03385 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_06860 HKOGLL_06860 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_15930 HKOGLL_15930 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
F4V73_RS11535 F4V73_RS11535 Morganella psychrotolerans - TetR/AcrR family transcriptional regulator
PMI_RS01470 PMI_RS01470 Proteus mirabilis HI4320 - TetR/AcrR family transcriptional regulator

Distribution of group_85 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_85 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_85

Orthogroup content: 12 members

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This page summarizes the annotation of all members of the orthologous group group_85.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 acrR 10
2 - 2

Product

# Product Occurence
1 DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA 10
2 TetR/AcrR family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1309 12 K Transcription (K) DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K16137 12 TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00440 12 Bacterial regulatory proteins, tetR family
PF16925 12 Tetracyclin repressor-like, C-terminal domain

Annotations of the 20 SwissProt hits

Annotation Number of occurrences
Biofilm operon icaADBC HTH-type negative transcriptional regulator IcaR 2
Fatty acid metabolism regulator protein 1
HTH-type transcriptional regulator LmrA 1
HTH-type transcriptional repressor DhaR 1
HTH-type transcriptional repressor KstR2 4
HTH-type transcriptional repressor NemR 2
Transcriptional regulator AcuR 1
Transposon Tn10 TetC protein 1
Uncharacterized HTH-type transcriptional regulator YdgC 1
Uncharacterized HTH-type transcriptional regulator YerO 1
Uncharacterized HTH-type transcriptional regulator YhgD 1
Uncharacterized HTH-type transcriptional regulator YuxN 1
Uncharacterized HTH-type transcriptional regulator YxaF 1
Uncharacterized HTH-type transcriptional regulator in lacX 3'region 1
Uncharacterized HTH-type transcriptional regulator pXO2-48/BXB0055/GBAA_pXO2_0055 1

Protein length

Min length 210
Max length 252
Mean length (sd) 229.5 (20.6)
Median length 222.0

Protein length distribution