Help to interpret the results
The page contains two contents:
General: this table lists the KO entries and their description specific to this pathway, and provides their frequencies in Morganella morganii S3 and in the whole dataset.
Profile + homologs: the distribution of the Kegg entries of Lysine biosynthesis Kegg pathway is displayed here. Given a Kegg entry and a genome, a red box indicates that one or more loci have been annotated with, while a green box indicates that no locus/loci has(have) been annotated with it, but it/they is/are part of an Orthologous group in which other members have been annotated with that Kegg entry, so it is likely that this copy(ies) also performs this Kegg function.
Check the composition of the Lysine biosynthesis pathway
| KO | Description | #in this genome | All occurrences |
|---|---|---|---|
| K00003 | homoserine dehydrogenase [EC:1.1.1.3] | 0 | 0 |
| K00133 | aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] | 2 | 14 |
| K00143 | L-2-aminoadipate reductase [EC:1.2.1.95] | 0 | 0 |
| K00215 | 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] | 1 | 7 |
| K00290 | saccharopine dehydrogenase (NAD+, L-lysine forming) [EC:1.5.1.7] | 0 | 0 |
| K00293 | saccharopine dehydrogenase (NADP+, L-glutamate forming) [EC:1.5.1.10] | 0 | 0 |
| K00674 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] | 1 | 7 |
| K00821 | acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] | 1 | 7 |
| K00825 | kynurenine/2-aminoadipate aminotransferase [EC:2.6.1.7 2.6.1.39] | 0 | 0 |
| K00838 | aromatic amino acid aminotransferase I / 2-aminoadipate transaminase [EC:2.6.1.57 2.6.1.39 2.6.1.27 2.6.1.5] | 0 | 0 |
| K00841 | aminotransferase [EC:2.6.1.-] | 0 | 0 |
| K00928 | aspartate kinase [EC:2.7.2.4] | 1 | 7 |
| K01439 | succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] | 1 | 7 |
| K01586 | diaminopimelate decarboxylase [EC:4.1.1.20] | 1 | 7 |
| K01655 | homocitrate synthase [EC:2.3.3.14] | 0 | 0 |
| K01705 | homoaconitate hydratase [EC:4.2.1.36] | 0 | 0 |
| K01714 | 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] | 1 | 8 |
| K01778 | diaminopimelate epimerase [EC:5.1.1.7] | 1 | 7 |
| K01798 | Alr-MurF fusion protein [EC:5.1.1.1 6.3.2.10] | 0 | 0 |
| K01928 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] | 1 | 7 |
| K01929 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] | 1 | 7 |
| K03340 | diaminopimelate dehydrogenase [EC:1.4.1.16] | 1 | 7 |
| K05822 | tetrahydrodipicolinate N-acetyltransferase [EC:2.3.1.89] | 0 | 0 |
| K05823 | N-acetyldiaminopimelate deacetylase [EC:3.5.1.47] | 0 | 0 |
| K05824 | homoisocitrate dehydrogenase [EC:1.1.1.87] | 0 | 0 |
| K05825 | 2-aminoadipate transaminase [EC:2.6.1.-] | 0 | 0 |
| K05827 | [lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase [EC:6.3.2.43] | 0 | 0 |
| K05828 | [amino group carrier protein]-L-2-aminoadipate/L-glutamate 6-kinase [EC:2.7.2.17 2.7.2.19] | 0 | 0 |
| K05829 | [amino group carrier protein]-6-phospho-L-2-aminoadipate/5-phospho-L-glutamate reductase [EC:1.2.1.103 1.2.1.106] | 0 | 0 |
| K05830 | [amino-group carrier protein]-gamma-(L-lysyl/L-ornithyl)-L-glutamate aminotransferase [EC:2.6.1.118 2.6.1.124] | 0 | 0 |
| K05831 | [amino group carrier protein]-lysine/ornithine hydrolase [EC:3.5.1.130 3.5.1.132] | 0 | 0 |
| K10206 | LL-diaminopimelate aminotransferase [EC:2.6.1.83] | 0 | 0 |
| K10977 | methanogen homocitrate synthase [EC:2.3.3.14 2.3.3.-] | 0 | 0 |
| K10978 | methanogen homoisocitrate dehydrogenase [EC:1.1.1.87 1.1.1.-] | 0 | 0 |
| K12524 | bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3] | 1 | 7 |
| K12525 | bifunctional aspartokinase / homoserine dehydrogenase 2 [EC:2.7.2.4 1.1.1.3] | 1 | 7 |
| K12526 | bifunctional diaminopimelate decarboxylase / aspartate kinase [EC:4.1.1.20 2.7.2.4] | 0 | 0 |
| K14267 | N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] | 0 | 0 |
| K15792 | MurE/MurF fusion protein [EC:6.3.2.13 6.3.2.10] | 0 | 0 |
| K16180 | methylornithine synthase [EC:5.4.99.58] | 0 | 0 |
| K16181 | 3-methylornithine--L-lysine ligase [EC:6.3.2.59] | 0 | 0 |
| K16182 | 3-methylornithyl-N6-L-lysine dehydrogenase [EC:1.4.1.-] | 0 | 0 |
| K16792 | methanogen homoaconitase large subunit [EC:4.2.1.114] | 0 | 0 |
| K16793 | methanogen homoaconitase small subunit [EC:4.2.1.114] | 0 | 0 |
| K17450 | homoaconitase [EC:4.2.1.-] | 0 | 0 |
| K17753 | isocitrate--homoisocitrate dehydrogenase [EC:1.1.1.286] | 0 | 0 |
| K24034 | spermidine synthase / saccharopine dehydrogenase (NADP+, L-glutamate-forming) [EC:2.5.1.16 1.5.1.10] | 0 | 0 |
| K25032 | alpha-aminoadipate-LysW ligase/glutamate-LysW ligase [EC:6.3.2.43 6.3.2.60] | 0 | 0 |