Orthogroup:group_664


Homologs in group_664

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02365 FBDBKF_02365 Morganella morganii S1 hrpA ATP-dependent RNA helicase HrpA
EHELCC_02835 EHELCC_02835 Morganella morganii S2 hrpA ATP-dependent RNA helicase HrpA
NLDBIP_00625 NLDBIP_00625 Morganella morganii S4 hrpA ATP-dependent RNA helicase HrpA
LHKJJB_01410 LHKJJB_01410 Morganella morganii S3 hrpA ATP-dependent RNA helicase HrpA
HKOGLL_01450 HKOGLL_01450 Morganella morganii S5 hrpA ATP-dependent RNA helicase HrpA
F4V73_RS04745 F4V73_RS04745 Morganella psychrotolerans hrpA ATP-dependent RNA helicase HrpA
PMI_RS05750 PMI_RS05750 Proteus mirabilis HI4320 hrpA ATP-dependent RNA helicase HrpA

Distribution of group_664 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_664 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_664

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_664.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hrpA 7

Product

# Product Occurence
1 ATP-dependent RNA helicase HrpA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1643 7 J Translation, ribosomal structure and biogenesis (J) HrpA-like RNA helicase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03578 7 ATP-dependent helicase HrpA [EC:3.6.4.13] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00270 7 DEAD/DEAH box helicase
PF00271 7 Helicase conserved C-terminal domain
PF04408 2 Helicase associated domain (HA2), winged-helix
PF07717 7 Oligonucleotide/oligosaccharide-binding (OB)-fold
PF11898 7 Domain of unknown function (DUF3418)
PF21010 7 Helicase associated domain (HA2), ratchet-like

Annotations of the 165 SwissProt hits

Annotation Number of occurrences
3'-5' RNA helicase YTHDC2 3
ATP-dependent DNA/RNA helicase DHX36 4
ATP-dependent RNA helicase A 5
ATP-dependent RNA helicase A protein 1
ATP-dependent RNA helicase DEAH11, chloroplastic 1
ATP-dependent RNA helicase DEAH12, chloroplastic 1
ATP-dependent RNA helicase DEAH13 1
ATP-dependent RNA helicase DHX15 3
ATP-dependent RNA helicase DHX15 homolog 1
ATP-dependent RNA helicase DHX29 2
ATP-dependent RNA helicase DHX30 6
ATP-dependent RNA helicase DHX33 3
ATP-dependent RNA helicase DHX8 3
ATP-dependent RNA helicase DQX1 3
ATP-dependent RNA helicase HrpA 2
ATP-dependent RNA helicase HrpA homolog 1
ATP-dependent RNA helicase HrpB 1
ATP-dependent RNA helicase TDRD9 4
ATP-dependent RNA helicase dhx29 1
ATP-dependent RNA helicase dhx8 1
Benign gonial cell neoplasm protein 1
DExH-box ATP-dependent RNA helicase DExH1 1
DExH-box ATP-dependent RNA helicase DExH2 1
DExH-box ATP-dependent RNA helicase DExH3 1
DExH-box ATP-dependent RNA helicase DExH4, chloroplastic 1
DExH-box ATP-dependent RNA helicase DExH5, mitochondrial 1
DExH-box ATP-dependent RNA helicase DExH6 1
DExH-box ATP-dependent RNA helicase DExH7, chloroplastic 1
DExH-box ATP-dependent RNA helicase DExH8 1
Dosage compensation regulator mle 1
Genome polyprotein 13
Genome polyprotein 1 4
Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 3
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 3
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 1
Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 1
Probable ATP-dependent RNA helicase DHR1 1
Probable ATP-dependent RNA helicase DHR2 1
Probable ATP-dependent RNA helicase DHX34 2
Probable ATP-dependent RNA helicase DHX35 2
Probable ATP-dependent RNA helicase DHX35 homolog 1
Probable ATP-dependent RNA helicase DHX37 1
Probable ATP-dependent RNA helicase DHX40 4
Probable ATP-dependent RNA helicase kurz 1
Probable ATP-dependent RNA helicase prh1 1
Probable ATP-dependent RNA helicase spindle-E 14
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH8 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 1
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 1
Putative ATP-dependent RNA helicase DHX15 1
Putative ATP-dependent RNA helicase DHX57 2
Putative ATP-dependent RNA helicase L540 1
Putative ATP-dependent RNA helicase PB1A10.06c 1
Putative ATP-dependent RNA helicase R366 1
Putative ATP-dependent RNA helicase YLR419W 1
Putative ATP-dependent RNA helicase rha-2 1
Putative ATP-dependent RNA helicase ucp12 1
Putative DEAH-box ATP-dependent helicase UM11114 1
Putative RNA Helicase B962L 4
Putative RNA helicase B962L 1
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 1
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32 3
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) 1
RNA editing associated helicase 2 1
RNA helicase NPH-II 12
Uncharacterized helicase C15C4.05 1
Zinc finger CCCH domain-containing protein 4 1

Protein length

Min length 1297
Max length 1323
Mean length (sd) 1315.7 (12.4)
Median length 1323.0

Protein length distribution