Homologs in group_589

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01720 FBDBKF_01720 97.2 Morganella morganii S1 hemB porphobilinogen synthase
EHELCC_02190 EHELCC_02190 97.2 Morganella morganii S2 hemB porphobilinogen synthase
NLDBIP_01270 NLDBIP_01270 97.2 Morganella morganii S4 hemB porphobilinogen synthase
LHKJJB_00765 LHKJJB_00765 97.2 Morganella morganii S3 hemB porphobilinogen synthase
HKOGLL_00805 HKOGLL_00805 97.2 Morganella morganii S5 hemB porphobilinogen synthase
PMI_RS07040 PMI_RS07040 82.0 Proteus mirabilis HI4320 hemB porphobilinogen synthase

Distribution of the homologs in the orthogroup group_589

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_589

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACB3 0.0 512 78 0 319 3 hemB Delta-aminolevulinic acid dehydratase Shigella flexneri
P0ACB2 0.0 512 78 0 319 1 hemB Delta-aminolevulinic acid dehydratase Escherichia coli (strain K12)
P30950 9.3e-112 330 52 1 315 3 hemB Delta-aminolevulinic acid dehydratase Bacillus subtilis (strain 168)
O67876 1.68e-111 329 53 1 300 3 hemB Delta-aminolevulinic acid dehydratase Aquifex aeolicus (strain VF5)
Q9K8G2 7.09e-111 328 51 1 315 3 hemB Delta-aminolevulinic acid dehydratase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q9ZMR8 3.04e-110 326 50 2 316 3 hemB Delta-aminolevulinic acid dehydratase Helicobacter pylori (strain J99 / ATCC 700824)
P56074 2.31e-108 321 49 2 316 3 hemB Delta-aminolevulinic acid dehydratase Helicobacter pylori (strain ATCC 700392 / 26695)
O28305 7.73e-108 320 52 3 315 3 hemB Delta-aminolevulinic acid dehydratase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P64335 1.78e-105 314 50 2 311 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus aureus (strain MW2)
Q6G8Q7 1.78e-105 314 50 2 311 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus aureus (strain MSSA476)
Q6GG37 1.78e-105 314 50 2 311 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus aureus (strain MRSA252)
P64334 1.78e-105 314 50 2 311 1 hemB Delta-aminolevulinic acid dehydratase Staphylococcus aureus (strain N315)
P64333 1.78e-105 314 50 2 311 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFA4 1.78e-105 314 50 2 311 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus aureus (strain COL)
Q2FXR3 1.78e-105 314 50 2 311 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q8CNZ0 5.18e-105 313 51 2 311 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNN5 5.18e-105 313 51 2 311 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P0C1R9 7.8e-104 310 50 2 309 3 hemB Delta-aminolevulinic acid dehydratase Staphylococcus aureus
P43087 3.38e-102 306 50 2 314 3 hemB Delta-aminolevulinic acid dehydratase Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q60178 3.34e-100 301 49 3 317 3 hemB Delta-aminolevulinic acid dehydratase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P77923 3.08e-99 298 47 1 315 3 hemB Delta-aminolevulinic acid dehydratase Propionibacterium freudenreichii subsp. freudenreichii
O26839 1.4e-98 296 50 4 320 3 hemB Delta-aminolevulinic acid dehydratase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q02250 2.95e-97 293 46 3 320 3 hemB Delta-aminolevulinic acid dehydratase Methanothermus sociabilis
P77969 5.75e-96 290 50 2 313 3 hemB Delta-aminolevulinic acid dehydratase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9SFH9 1.15e-93 287 47 6 318 2 HEMB1 Delta-aminolevulinic acid dehydratase 1, chloroplastic Arabidopsis thaliana
Q5Z8V9 2.1e-93 286 48 6 314 2 HEMB Delta-aminolevulinic acid dehydratase, chloroplastic Oryza sativa subsp. japonica
Q42836 1.86e-92 284 48 6 314 2 HEMB Delta-aminolevulinic acid dehydratase, chloroplastic Hordeum vulgare
P24493 1.03e-91 283 47 5 317 1 HEMB Delta-aminolevulinic acid dehydratase, chloroplastic Spinacia oleracea
P30124 6.89e-91 279 47 6 310 1 HEMB Delta-aminolevulinic acid dehydratase, chloroplastic (Fragment) Pisum sativum
Q8KCJ0 3.81e-90 275 46 1 297 3 hemB Delta-aminolevulinic acid dehydratase Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)
Q59334 4.06e-90 275 45 1 297 1 hemB Delta-aminolevulinic acid dehydratase Chlorobaculum parvum (strain DSM 263 / NCIMB 8327)
P54919 5.26e-90 275 48 3 318 3 hemB Delta-aminolevulinic acid dehydratase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P45623 1.84e-89 276 47 6 317 3 HEMB Delta-aminolevulinic acid dehydratase, chloroplastic Selaginella martensii
P43210 6.41e-89 275 48 6 318 2 HEMB Delta-aminolevulinic acid dehydratase, chloroplastic Glycine max
O84638 1.98e-88 271 45 2 311 3 hemB Delta-aminolevulinic acid dehydratase Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q43058 2.48e-87 271 48 6 318 2 HEMB Delta-aminolevulinic acid dehydratase, chloroplastic Physcomitrium patens
Q9Z7G1 8.55e-87 266 46 2 317 3 hemB Delta-aminolevulinic acid dehydratase Chlamydia pneumoniae
P46723 5.55e-86 265 46 3 317 3 hemB Delta-aminolevulinic acid dehydratase Mycobacterium leprae (strain TN)
P45622 2.31e-85 264 46 2 318 1 hemB Delta-aminolevulinic acid dehydratase Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q94LA4 1.1e-84 264 46 7 328 3 HEMB2 Probable delta-aminolevulinic acid dehydratase 2, chloroplastic Arabidopsis thaliana
P9WMP5 2.17e-84 260 47 3 317 1 hemB Delta-aminolevulinic acid dehydratase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMP4 2.17e-84 260 47 3 317 3 hemB Delta-aminolevulinic acid dehydratase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9PLU4 7.13e-84 259 44 2 311 3 hemB Delta-aminolevulinic acid dehydratase Chlamydia muridarum (strain MoPn / Nigg)
Q42682 2.25e-83 260 45 6 317 2 HEMB Delta-aminolevulinic acid dehydratase, chloroplastic Chlamydomonas reinhardtii
Q59643 3.38e-79 247 45 5 322 1 hemB Delta-aminolevulinic acid dehydratase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P10518 7.11e-78 244 45 5 300 1 Alad Delta-aminolevulinic acid dehydratase Mus musculus
P42504 5.47e-77 241 44 4 320 1 hemB Delta-aminolevulinic acid dehydratase Rhodobacter capsulatus
Q58DK5 1.34e-76 240 44 5 302 2 ALAD Delta-aminolevulinic acid dehydratase Bos taurus
P06214 3.15e-75 237 43 6 316 1 Alad Delta-aminolevulinic acid dehydratase Rattus norvegicus
P13716 3.62e-75 237 44 5 302 1 ALAD Delta-aminolevulinic acid dehydratase Homo sapiens
Q60HH9 6.03e-74 234 43 5 302 2 ALAD Delta-aminolevulinic acid dehydratase Macaca fascicularis
Q5R971 4.86e-73 231 43 5 302 2 ALAD Delta-aminolevulinic acid dehydratase Pongo abelii
P05373 2.69e-70 224 41 5 307 1 HEM2 Delta-aminolevulinic acid dehydratase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O42768 3.01e-68 219 39 5 306 1 HEM2 Delta-aminolevulinic acid dehydratase Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
Q55E06 5.24e-68 218 41 5 295 3 alad Delta-aminolevulinic acid dehydratase Dictyostelium discoideum
Q750E0 1.05e-67 218 40 5 305 3 HEM2 Delta-aminolevulinic acid dehydratase Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
P78974 5.22e-63 206 41 5 311 2 hem2 Delta-aminolevulinic acid dehydratase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q59295 1.87e-56 184 45 0 204 3 hemB Delta-aminolevulinic acid dehydratase (Fragment) Ruminiclostridium josui

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04050
Feature type CDS
Gene hemB
Product porphobilinogen synthase
Location 856742 - 857716 (strand: -1)
Length 975 (nucleotides) / 324 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_589
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00490 Delta-aminolevulinic acid dehydratase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0113 Coenzyme transport and metabolism (H) H Delta-aminolevulinic acid dehydratase, porphobilinogen synthase

Kegg Ortholog Annotation(s)

Protein Sequence

MQHDIQRLRRIRQTPQMRDLFRETSLSLNDLALPIFVEEGADDYKAIASMPGVMRIPEKRLAYEIERIAKAGIKSVMTFGVSHHLDATGSDAWSENGLVARMSRICKETVPEMVVMSDTCFCEYTSHGHCGVVHDGVVDNDETLHNLGLQAVIAAQAGADFIAPSAAQDGQVRAIRLALDAAGFHNTGIVSYSTKFASALYGPFRDAAGSCLKGDRKTYQMDPMNRREAIRESLTDEQEGADMLMVKPAGAYLDILRDVRERSNLPLAAYQVSGEYAMIKLAAQAGAIDEERVVLETLGSIKRAGADLIFSYFALSLAENKILS

Flanking regions ( +/- flanking 50bp)

TGGCTGCATTATTTTTTTGCGAACAATGCGAACAAGGAGCTATTGTCGTTATGCAACATGACATCCAACGTCTGAGAAGAATCCGCCAGACCCCGCAAATGCGTGATCTGTTCCGGGAAACCTCACTAAGTCTCAATGACCTTGCATTACCGATTTTTGTCGAAGAAGGTGCCGACGACTATAAAGCTATCGCCAGTATGCCGGGCGTGATGCGCATTCCGGAAAAACGCCTGGCGTATGAGATAGAGCGGATAGCAAAAGCCGGGATCAAATCAGTGATGACGTTTGGTGTGTCACATCACCTTGACGCCACCGGCAGCGACGCCTGGTCAGAAAACGGGCTAGTTGCCCGCATGTCCCGCATCTGCAAAGAAACTGTGCCTGAAATGGTGGTGATGTCTGATACCTGTTTCTGTGAATACACCAGCCACGGGCATTGCGGTGTGGTGCATGACGGTGTTGTCGATAATGACGAAACATTGCATAACCTGGGCTTACAGGCTGTTATCGCTGCACAGGCCGGAGCTGATTTTATTGCGCCATCTGCGGCGCAGGACGGACAGGTCCGCGCGATCCGTCTGGCACTGGATGCCGCCGGTTTCCATAATACCGGGATTGTGTCTTATTCGACAAAATTTGCCTCTGCCCTTTACGGCCCGTTCCGCGATGCCGCCGGTTCCTGCCTGAAAGGCGACCGCAAAACCTACCAGATGGACCCGATGAACCGCCGCGAAGCTATCCGCGAATCACTTACCGATGAGCAGGAAGGTGCGGATATGCTGATGGTTAAACCAGCCGGGGCTTACCTTGATATCCTGCGTGATGTGCGTGAGCGTTCAAACCTGCCGCTGGCGGCTTATCAGGTGAGCGGCGAATATGCCATGATCAAACTGGCCGCGCAGGCCGGGGCTATTGATGAAGAACGTGTGGTACTGGAAACGCTGGGGTCAATCAAGCGCGCCGGTGCTGATTTGATTTTCAGTTACTTTGCCCTGAGTCTGGCAGAGAACAAGATCCTGAGCTGATTGTTTAAAATATCACATTTGCTGAAAAATCCCGGTTCGCCGGGATTTTT