COG4977


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4977, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 34 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain
Function(s) descr. Transcription (K)

Occurence in the database

COG4977 is associated with 34 different proteins (see tab "Protein list" and "Profile")
The 34 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_498 FBDBKF_00925 169761 170480 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
1 group_500 FBDBKF_00950 173699 174586 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
2 group_3214 FBDBKF_02795 255814 256599 -1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S1
3 group_2576 FBDBKF_02825 260709 261545 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
4 group_3373 FBDBKF_11705 129090 129671 -1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S1
5 group_2329 FBDBKF_18175 654 1568 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S1
6 group_500 EHELCC_00595 134282 135169 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
7 group_498 EHELCC_00620 138388 139107 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
8 group_3214 EHELCC_03265 643634 644419 -1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S2
9 group_2576 EHELCC_03295 648529 649365 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
10 group_3373 EHELCC_17625 27433 28014 -1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S2
11 group_2329 EHELCC_18210 527 1441 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S2
12 group_2576 NLDBIP_00165 30771 31607 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
13 group_3214 NLDBIP_00195 35717 36502 1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S4
14 group_498 NLDBIP_02840 541029 541748 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
15 group_500 NLDBIP_02865 544967 545854 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
16 group_2329 NLDBIP_18135 728 1642 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S4
17 group_3373 NLDBIP_19295 3378 3959 -1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S4
18 group_3214 LHKJJB_01840 356183 356968 -1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S3
19 group_2576 LHKJJB_01870 361078 361914 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
20 group_498 LHKJJB_04355 148270 148989 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
21 group_500 LHKJJB_04380 152208 153095 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
22 group_3373 LHKJJB_18065 27433 28014 -1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S3
23 group_2329 LHKJJB_18330 566 1480 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S3
24 group_3214 HKOGLL_01880 361694 362479 -1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S5
25 group_2576 HKOGLL_01910 366589 367425 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
26 group_500 HKOGLL_02665 134487 135374 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
27 group_498 HKOGLL_02690 138593 139312 1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
28 group_2329 HKOGLL_18065 544 1458 -1 araC AraC-type DNA-binding domain and AraC-containing proteins Morganella morganii S5
29 group_3373 HKOGLL_19015 14040 14621 1 glxA Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain Morganella morganii S5
30 group_498 F4V73_RS06920 1435870 1436604 -1 AraC family transcriptional regulator Morganella psychrotolerans
31 group_500 F4V73_RS06945 1439965 1440864 -1 AraC family transcriptional regulator Morganella psychrotolerans
32 group_500 F4V73_RS07325 1529150 1530061 -1 AraC family transcriptional regulator Morganella psychrotolerans
33 group_1144 PMI_RS18495 4060644 4061546 -1 robA MDR efflux pump AcrAB transcriptional activator RobA Proteus mirabilis HI4320