Orthogroup:group_1


Homologs in group_1

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28 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_09470 FBDBKF_09470 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_09495 FBDBKF_09495 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_20005 FBDBKF_20005 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
FBDBKF_20070 FBDBKF_20070 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
EHELCC_03460 EHELCC_03460 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
EHELCC_03525 EHELCC_03525 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
EHELCC_09915 EHELCC_09915 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_09940 EHELCC_09940 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_03460 NLDBIP_03460 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
NLDBIP_03525 NLDBIP_03525 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
NLDBIP_10285 NLDBIP_10285 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_19235 NLDBIP_19235 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_09290 LHKJJB_09290 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
LHKJJB_09355 LHKJJB_09355 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
LHKJJB_11070 LHKJJB_11070 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_19135 LHKJJB_19135 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_09620 HKOGLL_09620 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
HKOGLL_09685 HKOGLL_09685 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
HKOGLL_14130 HKOGLL_14130 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_18915 HKOGLL_18915 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS01690 F4V73_RS01690 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS08420 F4V73_RS08420 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS10485 F4V73_RS10485 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS10510 F4V73_RS10510 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS19140 F4V73_RS19140 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS05155 PMI_RS05155 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS10960 PMI_RS10960 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS14845 PMI_RS14845 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_1 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1

Orthogroup content: 28 members

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This page summarizes the annotation of all members of the orthologous group group_1.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hipB 10
2 - 18

Product

# Product Occurence
1 Transcriptional regulator, contains XRE-family HTH domain 10
2 HTH cro/C1-type domain-containing protein 10
3 helix-turn-helix transcriptional regulator 8

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 28 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 28 Helix-turn-helix

Annotations of the 16 SwissProt hits

Annotation Number of occurrences
Endothelial differentiation-related factor 1 2
Endothelial differentiation-related factor 1 homolog 1
HTH-type transcriptional regulator DicA 1
Putative HTH-type transcriptional regulatory protein Mboo_0195 1
Putative HTH-type transcriptional regulatory protein PAE1627 1
Putative HTH-type transcriptional regulatory protein PF1851 1
Putative HTH-type transcriptional regulatory protein PH1808 1
Repressor protein CI (Fragment) 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator RC0668 1
Uncharacterized HTH-type transcriptional regulator RP497 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator y4dJ 1
Uncharacterized HTH-type transcriptional regulator y4wC 1
Uncharacterized transcriptional regulator in ATPase CF(0) region 1

Protein length

Min length 78
Max length 112
Mean length (sd) 95.3 (11.0)
Median length 98.0

Protein length distribution