Homologs in group_1

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27 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09470 FBDBKF_09470 41.7 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_09495 FBDBKF_09495 83.5 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_20005 FBDBKF_20005 35.6 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
FBDBKF_20070 FBDBKF_20070 39.2 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
EHELCC_03460 EHELCC_03460 39.2 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
EHELCC_03525 EHELCC_03525 35.6 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
EHELCC_09915 EHELCC_09915 83.5 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_09940 EHELCC_09940 41.7 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_03460 NLDBIP_03460 39.2 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
NLDBIP_03525 NLDBIP_03525 35.6 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
NLDBIP_10285 NLDBIP_10285 41.7 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_19235 NLDBIP_19235 83.5 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_09290 LHKJJB_09290 39.2 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
LHKJJB_09355 LHKJJB_09355 35.6 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
LHKJJB_11070 LHKJJB_11070 41.7 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_19135 LHKJJB_19135 83.5 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_09620 HKOGLL_09620 35.6 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
HKOGLL_09685 HKOGLL_09685 39.2 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
HKOGLL_14130 HKOGLL_14130 41.7 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_18915 HKOGLL_18915 83.5 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS01690 F4V73_RS01690 39.2 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS08420 F4V73_RS08420 24.0 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS10510 F4V73_RS10510 44.4 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS19140 F4V73_RS19140 46.2 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS05155 PMI_RS05155 39.0 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS10960 PMI_RS10960 28.6 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS14845 PMI_RS14845 33.7 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_1

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69736 0.000259 40 38 0 55 1 Edf1 Endothelial differentiation-related factor 1 Rattus norvegicus
Q9JMG1 0.000259 40 38 0 55 1 Edf1 Endothelial differentiation-related factor 1 Mus musculus
Q5ZMC0 0.000864 39 36 0 55 2 EDF1 Endothelial differentiation-related factor 1 homolog Gallus gallus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10485
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 215299 - 215598 (strand: 1)
Length 300 (nucleotides) / 99 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000002
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1
Orthogroup size 28
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MCDNTISLSKEVGFFLKRRRKSQGLTGSELAEKLNISQQQISRYERGLSVLSPDVMLRYCAALGMAEREISELFSIISTYYQYAVSEQENIDGFDDTQC

Flanking regions ( +/- flanking 50bp)

CGGATAAACATAAAAGGAGTTAAACATCCTCAGGTAGAACAGGTTTTTCTATGTGTGATAATACTATATCTCTTTCGAAGGAAGTGGGTTTTTTCTTAAAAAGAAGGCGAAAAAGTCAGGGGTTAACCGGTTCGGAACTGGCTGAGAAACTCAATATCAGTCAGCAGCAAATATCCCGCTATGAACGCGGTTTGTCTGTGCTTAGTCCGGATGTCATGCTCAGGTATTGCGCGGCATTGGGAATGGCGGAGCGTGAGATCAGCGAACTTTTCTCCATTATCAGCACATACTATCAGTACGCTGTTTCCGAACAGGAAAATATAGACGGATTTGATGACACACAATGCTGAATATCTATCCGTAATGACTTCCCTCTTTATCTGTTCTTTTGAGCTGACTC